Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01909 ATGTCAGATGAATATGAAAGGAGTGAGGAACAGGCTGATGACACCTCAATGGGATCATCCCAGAAATGCTCATCCTTTGATTTGAATGAAGAAGCAAGTGAAGACAACAATGAGAACGATGAGGGATACGAGAAAGCAAAGGACGACGAAGGAACTTCAGCAAATAAAAGTAGCAGCATAACAAAAGAAGGAAATAATGAACGAAGAGGTGGCGTGAGACAATACGTTAGATCAAAGATGCCTCGCCTTCGGTGGACTCCTGAACTTCATCTATCCTTTGTGCATGCTGTTGAAAGGCTTGGAGGTCAAGAGAGAGCAACACCCAAATTGGTACTTCAGCTAATGAATGTGAGAGGACTCAGCATTGCTCATGTCAAGAGTCACTTACAGATGTATCGAAGCAAGAAACTTGACGAGGCTGGGCAAGTATTAAGTCAAACATTCAAATCAGCCCATGAACTTGGTCGTATTTCACATGTAGCCCATCAATCCATTAACCCTCGTCAACATTTTAAAATGGGAAATGGTGGAATTATTCTAGCAAGTGATTACAACGAGCACAGTTATTTCCATGGTCTCCTACGTCCCTCCTCCCTATCACAATCGCATTCAAAAGTCATCGATTCAAGGCACCAACAATGGTACTTCAATAATCATCAACCTTTTAGAATAAGACCAAGTTATTTTAGCAACGAAGTTGTGTCCTCAACAGCCTTACAAATGCAAGGAAGATCAATATCTTCAAACCAAAATCAAACAATGGATACTACCAAAATTGCACCCATGCGACCAAGCCAATTTATTGAAGAGAAAAGGTGGCCTCCAATAGAAATTATGAACAGTCATCACTGGAAAAAAAGGTTACCTGCCAATATTACTTCTAATACTGGGTCACAATCTGTTGTACATCAATTTGGCACCACTCCAGCATCTCTTAGATCAAGTGAGTTGAACTTCGGAAACAACACAAGAATCAGGGAACATCTATCGAACTCCGACGAGCATCGCAACTATTCCAACAGTTTAAAGCTAGAATTTGATCCACCATTTCGGATTAAGTTGAATAAAGAAAAAATGCAGAAAGAGAAGCAATGGGTGCCTGATTTGCGACTGAGTTTAAGTCAGAGAGATGGCAACAATGATGGCAAGACTGATCATTGCAGAGAAACCCAAGAAATCAACACTAAACTTTCACTTTCATAG 1203 0.4048 MSDEYERSEEQADDTSMGSSQKCSSFDLNEEASEDNNENDEGYEKAKDDEGTSANKSSSITKEGNNERRGGVRQYVRSKMPRLRWTPELHLSFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDEAGQVLSQTFKSAHELGRISHVAHQSINPRQHFKMGNGGIILASDYNEHSYFHGLLRPSSLSQSHSKVIDSRHQQWYFNNHQPFRIRPSYFSNEVVSSTALQMQGRSISSNQNQTMDTTKIAPMRPSQFIEEKRWPPIEIMNSHHWKKRLPANITSNTGSQSVVHQFGTTPASLRSSELNFGNNTRIREHLSNSDEHRNYSNSLKLEFDPPFRIKLNKEKMQKEKQWVPDLRLSLSQRDGNNDGKTDHCRETQEINTKLSLS 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01909 400 Gene3D - 80 137 - -
Cca09g01909 400 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 1 400 IPR044848 GO:0003700
Cca09g01909 400 SUPERFAMILY Homeodomain-like 79 135 IPR009057 -
Cca09g01909 400 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 81 136 IPR006447 GO:0003677
Cca09g01909 400 MobiDBLite consensus disorder prediction 1 75 - -
Cca09g01909 400 Pfam Myb-like DNA-binding domain 83 133 IPR001005 -
Cca09g01909 400 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 400 - -
Cca09g01909 400 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 137 IPR017930 -
Cca09g01909 400 MobiDBLite consensus disorder prediction 361 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01909 Cca-Chr9 43990824 43997388 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01909 72 152 G2-like Transcription Factor Family AT2G42660 70.370 6.97e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Cca09g01909 Myb_DNA-binding 2.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01909 - - gmx:100787138 692.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01909 09 43990824 43997388 Cca08g02356 08 57513100 57519992 PCT