Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01908 ATGTGTGAGTGGGTGGTGGGGGGTGAAGAGAGAGAAAGTGGGAGAAGAAACAAAACAATCCCAAGATTGCAACAACAGGATGAAGTTGAAGGTGGTCGGAGAGAGGTTCCTCTGAGGCACCAATTCTCCCTTCTGCCTTTTTCTCATTCTCTCTCTCAGTTTACCACCCCACCATTTTCCATTGCATTGCGTCATCACACATTGTTCATTCTTCCATCAAAGGGGCTTCTTTTCCTGCACCCCTTCCTCCCATCTGCATGCCCCAGCCCTCATTGCTGGGAGGCATTCGAGAGGGAGATGTTGAGCAAAGGAGCTTCAATTGTTTTTGCTTTCCCTTGTAATGCACAGGAGATAAAACAGATATTGTCTCGACCAATTTGGCATTGCCCTCGCATAGTTATGGGAATCATATGGGGGCTCTTTGGATTGTGGCTCAGAGTTTTTGTTGGATTGATTTCTCTATGCGGAACTCAACAGTGTTGCTCTCTGAACGATGAAGGTTTAGCGTTGTTGGAATTTCGGGTAAGAATAAATTCTGATCCTTTTGGTGCTCTGGCAAATTGGAATCCAAATGATTGCAACCCTTGCAAGTGGTTTGGTGTTCGTTGTGTTGATGATAAAGTGCAAATGCTGGTCCTAACCAATCTATCTTTGGAAGGGACGTTGGCTCCTGAGCTTGGGAAACTTAGTCATCTAAAATCCATTGTATTATGCAAGAACGGTTTTTCTGGTACTATTCCCAAAGAACTTGGAGATCTAGACAAGCTGGAGTTTTTGGATTTAAGGGAGAATAACTTGTTGATTTGTGACAATAAAATTGAAGGCAGTGATTCTCTAGAACCCAGATTCTCTAATAACAATTGTTCTACTCCTTTGTCAACTTTGTCTCGTGGCAAAAAGAGAAAGTTTTCACGCCGTATACAATTATTAGACCAACAACAAGAAGAACTACAACATGGCATGACAAGTATGTGGTGTGGAAATATCAAGCAATGGAACATGGAAGATTCATTTATTATTCCACTTAAAGGAGCACTCATAAAATACCTCAATGCTGCAGCGGCTCTGCCACTCTTCAAACTTGGAAAGGCTACCCCTCGTGCATACGAAGAGAAATATTGTGACAGTCTGACTGGTTCTGATGAGTTAGATATTGGCCAGAATGTATTAAATCTAGTCAATTCGGCACGACGTAAGTTGCTTGATCAGTCCAATAACCTTGCAGCTGCACCTTTCAGTGGTGGGCCTACTATAGAGATCAGTACTATTCCATATACCCAGAGCAGTGGAGCTTTCCCAGCTGTGCCAGATGCCAATAAGAAACAAAATCAGTCTCCAGCACCATTGCCTCCACCTTCTAATTCTCCACGTGTAAACCAAGCAAGTCAACAAAATTCAGCTAATGGAGCTTCTGAAAATTTGTGGAAGTATATCATCATAATCGCAGGTGTCGCTGTCTTGGTCATTGTTATTTTGGTCGTGCTTTGCATTTGGCGAAAACGAGCAGCAAAAGTAATAAAGCCCTGGAAGACAGGAATAAGTGGACAGTTGCAGAAAGCGTTTATAACAGGGGTCCCCAAGTTGAATCGGGCAGAACTGGAGACAGCCTGTGAAGATTTCAGCAATATCATTTATAGTTTTGATGAATGCATCATATACAAAGGAACACTATCCAGTGGAGTTGAGATTGCCGTTGATTCTACTATTGTTACTTCTGCCCAAGTTTGGTCAAAGAGCATGGAGACGGCCTATCGCAAAAAGATTGCTACATTGTCCCGTGTTAACCATAAGAACTTTACCAATCTTATTGGGTACTGTGATGAAGAACAACCATTTACAAGGATGATGGTGTTTGAGTATGCTCCTAATGGAAGCTTGTTTGAGCATTTGCATGTTAAGGAAGTTGAACATCTTGACTGGAGCGCAAGGATGAGGGTCATTATGGGCACTGCTTACTGTCTTCAGTACATGCACCATGATCTCAATCCACCAGTAGCTCATTCCAACCTCAACTCAGTTTCTATATTATTAACTGATGACTTTGCTGCTAAGATATCGGAGATCTCTTTTGGCAAGAATGTGTTAACACCAGCCAACACAAGTGGAGATGAATCACATAAATCTGAGTTGCCACCGCAGGCTGAACCTGAAACTGATGTCTATAACTTTGGAGTATTGTTGCTTGAAATCATTTCTGGGAAACTAACTTACTCTGAAGAACAAGGCCTCCTTGTGAACTGGGCTGCTGAGCACTTGAATAATAAGCAAAGCATCAGCAATCTGATCGACCCCATGCTGGAATCCTTCAAAGACGAAGAACTTGATGTCATCTGTGATGTGATCAAAGATTGTCTTCAATCTGATACAAGGTTAAGACCAACAATGAAGGACATAACACCCAGATTGAGGGAAGTGCTTCGCGTGTCACCTGAGCAAGCTGTTCCAAGACTTTCTCCACTCTGGTGGGCTGAACTCGAGATTTTATCATTGGAGACCACTTAA 2502 0.4257 MCEWVVGGEERESGRRNKTIPRLQQQDEVEGGRREVPLRHQFSLLPFSHSLSQFTTPPFSIALRHHTLFILPSKGLLFLHPFLPSACPSPHCWEAFEREMLSKGASIVFAFPCNAQEIKQILSRPIWHCPRIVMGIIWGLFGLWLRVFVGLISLCGTQQCCSLNDEGLALLEFRVRINSDPFGALANWNPNDCNPCKWFGVRCVDDKVQMLVLTNLSLEGTLAPELGKLSHLKSIVLCKNGFSGTIPKELGDLDKLEFLDLRENNLLICDNKIEGSDSLEPRFSNNNCSTPLSTLSRGKKRKFSRRIQLLDQQQEELQHGMTSMWCGNIKQWNMEDSFIIPLKGALIKYLNAAAALPLFKLGKATPRAYEEKYCDSLTGSDELDIGQNVLNLVNSARRKLLDQSNNLAAAPFSGGPTIEISTIPYTQSSGAFPAVPDANKKQNQSPAPLPPPSNSPRVNQASQQNSANGASENLWKYIIIIAGVAVLVIVILVVLCIWRKRAAKVIKPWKTGISGQLQKAFITGVPKLNRAELETACEDFSNIIYSFDECIIYKGTLSSGVEIAVDSTIVTSAQVWSKSMETAYRKKIATLSRVNHKNFTNLIGYCDEEQPFTRMMVFEYAPNGSLFEHLHVKEVEHLDWSARMRVIMGTAYCLQYMHHDLNPPVAHSNLNSVSILLTDDFAAKISEISFGKNVLTPANTSGDESHKSELPPQAEPETDVYNFGVLLLEIISGKLTYSEEQGLLVNWAAEHLNNKQSISNLIDPMLESFKDEELDVICDVIKDCLQSDTRLRPTMKDITPRLREVLRVSPEQAVPRLSPLWWAELEILSLETT 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01908 833 MobiDBLite consensus disorder prediction 696 715 - -
Cca09g01908 833 MobiDBLite consensus disorder prediction 434 465 - -
Cca09g01908 833 PANTHER PROTEIN MALE DISCOVERER 2 134 833 - -
Cca09g01908 833 Gene3D Transferase(Phosphotransferase) domain 1 621 814 - -
Cca09g01908 833 SUPERFAMILY L domain-like 164 275 - -
Cca09g01908 833 Gene3D Ribonuclease Inhibitor 166 293 IPR032675 -
Cca09g01908 833 Pfam Leucine rich repeat N-terminal domain 164 203 IPR013210 -
Cca09g01908 833 PANTHER LRR RECEPTOR-LIKE KINASE 134 833 - -
Cca09g01908 833 Gene3D Phosphorylase Kinase; domain 1 509 620 - -
Cca09g01908 833 ProSiteProfiles Protein kinase domain profile. 503 806 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01908 833 SUPERFAMILY Protein kinase-like (PK-like) 546 801 IPR011009 -
Cca09g01908 833 Pfam Protein tyrosine and serine/threonine kinase 570 801 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01908 Cca-Chr9 43966419 43972816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01908 218 805 Receptor kinase-like Gene Family AT5G56040 25.397 2.98e-40 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Cca09g01908 PK_Tyr_Ser-Thr 1.2e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01908 - - gmx:100808098 1081.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01908 09 43966419 43972816 Cca09g01908 09 43966419 43972816 ECH
Cca08g02355 08 57483859 57489511 Cca09g01908 09 43966419 43972816 ECH