Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01892 ATGGCTTCTCCCGGTGGTTCGAGCTGGCTTCAAAACTCAGGATCGGAGGGAAGCACGGTGGAAGAAAGGAAGAGGAAGAGAATGGTGTCGAACAGAGAATCGGCACGCAGATCGAGGATGAGGAAACAGCAGCACCTGGAAGGCTTGAGTGTGGAAGTGGATCGGCTGAAGAAGGAGAAGGAGCAAATGAGCGGCAACATAAGCATGACCATGCGGATGCTGCAGAACGTGGAGGCGGAGAACGCGATTCTGAGGGCGCAGATGGCGGAACTCACCAACAGCTTGAACTCGCTGAACGAAATAATCGATTTCATAAACTCCACAAACAGCTTAATGTTGGAGAATGATTGTGGCTTCGTGGAGCCTTGGAATTGGAACTCTCTGCCTTTCAACCAACCAATCGTTGCCTCTGCTGCTGACGTCTTCATGTTTTGA 435 0.5103 MASPGGSSWLQNSGSEGSTVEERKRKRMVSNRESARRSRMRKQQHLEGLSVEVDRLKKEKEQMSGNISMTMRMLQNVEAENAILRAQMAELTNSLNSLNEIIDFINSTNSLMLENDCGFVEPWNWNSLPFNQPIVASAADVFMF 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01892 144 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 21 84 IPR004827 GO:0003700|GO:0006355
Cca09g01892 144 Pfam bZIP transcription factor 23 80 IPR004827 GO:0003700|GO:0006355
Cca09g01892 144 Gene3D - 21 74 - -
Cca09g01892 144 MobiDBLite consensus disorder prediction 1 48 - -
Cca09g01892 144 MobiDBLite consensus disorder prediction 18 48 - -
Cca09g01892 144 Coils Coil 39 66 - -
Cca09g01892 144 PANTHER BZIP TRANSCRIPTION FACTOR 44 5 143 - -
Cca09g01892 144 Coils Coil 74 101 - -
Cca09g01892 144 SMART brlzneu 19 83 IPR004827 GO:0003700|GO:0006355
Cca09g01892 144 SUPERFAMILY Leucine zipper domain 23 76 IPR046347 GO:0003700|GO:0006355
Cca09g01892 144 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 26 41 IPR004827 GO:0003700|GO:0006355
Cca09g01892 144 MobiDBLite consensus disorder prediction 1 17 - -
Cca09g01892 144 CDD bZIP_plant_GBF1 24 75 IPR045314 GO:0003700|GO:0006355
Cca09g01892 144 PANTHER BZIP TRANSCRIPTION FACTOR BZIP124 5 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01892 Cca-Chr9 43747345 43748826 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01892 16 144 bZIP Transcription Factor Family AT4G34590 46.479 5.68e-32 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Cca09g01892 bZIP_1 3.4e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01892 K25786 - gmx:778139 162.155