Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01889 ATGGTTATGGAATATCAAGACCAAAAGGCCAAGGAAGGAAGATTCTATGAGAAACTCAAGATCAAGAACAAGCCAAAGTTTGTTGGAGTGAGACAAAGGGCTTCAGGGAAATGGGCAGCAGAAATCAAAGACACATCAAAGAAGATTAGGATGTGGCTTGGAACTTATCAAACTGCTGAAGAAGCTGCTCGAGCCTATGATGAAGCTGCATGCCTCCTTCGAGGTTCAAACACTCGCACCAACTTTTCTACTCATGAATATGCCAATGCTACAAACTCTCCTATATATCTCAAACTCAGAAACCTCCTTGATCGAAAAGCCATGCCAAATCAAGTTCAAATTCAAAACAATTCCCCTATGATAAGTGCCACTTTCCAAGGTGCACCTAGTGGTAGTACTAGTACCATGAATAACATCATGGTCATGGAAGATAACTTTGCTAGTAGTAGTGAAGGTAAGTCTTTGCTTTTGCTTCAGAATCAAGTCTCTGATGATAACATGTGTGGATTTGATATGAATATGTTCAACTGTTCAATGGGAATCACATCAAATATGTCGCACTTTGATTATTCATGGCCATTAGCCCAACAAAGGAGTAACGAATTACCAATAGCAAAAGATGGTTTGAATGAGTGGCATGTGGAGGATACATATGAATATGATGTCAATTATCCTCTGTCACACTTTTTTTGCTTCACTTGA 702 0.3932 MVMEYQDQKAKEGRFYEKLKIKNKPKFVGVRQRASGKWAAEIKDTSKKIRMWLGTYQTAEEAARAYDEAACLLRGSNTRTNFSTHEYANATNSPIYLKLRNLLDRKAMPNQVQIQNNSPMISATFQGAPSGSTSTMNNIMVMEDNFASSSEGKSLLLLQNQVSDDNMCGFDMNMFNCSMGITSNMSHFDYSWPLAQQRSNELPIAKDGLNEWHVEDTYEYDVNYPLSHFFCFT 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01889 233 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700|GO:0006355
Cca09g01889 233 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Cca09g01889 233 Gene3D AP2/ERF domain 26 85 IPR036955 GO:0003700|GO:0006355
Cca09g01889 233 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Cca09g01889 233 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 11 154 - -
Cca09g01889 233 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Cca09g01889 233 Pfam AP2 domain 25 75 IPR001471 GO:0003700|GO:0006355
Cca09g01889 233 CDD AP2 25 82 IPR001471 GO:0003700|GO:0006355
Cca09g01889 233 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERN2 11 154 - -
Cca09g01889 233 SUPERFAMILY DNA-binding domain 26 84 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01889 Cca-Chr9 43714314 43715015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01889 3 221 AP2-EREBP Transcription Factor Family AT5G19790 42.793 2.71e-38 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca09g01889 AP2 5.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01889 K09286 - gmx:100803832 332.413