Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca09g01871 | ATGCGATCTTCATGGGCTGATATGGCTGCAAATTCTGCAGCTGAAAATGCTGATACCGGTTCTTCTGCTAACAATGGGGAAACTGGTAGCACATTAGCTCCTTCGCGGCCAGTTTATGTTCCTCCCCATCTGAGGAACCGCCAGCCATCGGCGGAATCCCCTGCCCCAACATATAGTGGCCCTTCTActggttctgctggctctagttctggtgctggtAATTTGGGATCCCGTTGGTCTGCACCCAGAAATGATTATCGTTCTGGTGGCTGGGATCGTGGCCGGGAGCGGGAAGTCAATCCTTTTGGAGACGAGGATACTGCTGAAGAAGGGGCATCTAGTGAGCAGGAGAATACAGGAATAAATTTTGATGCCTATGAAGATATTCCAGTGGAGACCAGTGGTGAAAATGTGCCTCCACCTGTGAATACATTTGCAGAGATTGACTTGGGTGAAGCACTTAATCAGAATATAAGAAGGTGCAAATACGTGAAGCCAACTCCTGTTCAGCGGCATACCATTCCAATTTCCCTCGCTGGACGTGATTTGATGGCTTGTGCGCAGACTGGTTCTGGAAAGACAGCTGCATTCTGTTTCCCAATTATCAGTGGAATTATGAGGGGCCAACCCGTACAGAGGCCAGCTCGTGGGGTGCGTACAGCGCATCCGCTTGCGCTTGTTCTTTCTCCAACTAGGGAACTATCAATGCAAATACATGAAGAGGCTAGAAAGTTTTCATACCAAACTGGGGTTAGGGTGGTTGTTGCTTATGGTGGAGCACCAATAAATCAGCAGCTGCGGGATCTTGAAAGAGGGGTGGACATTCTTGTTGCAACTCCTGGAAGACTGGTAGATTTGCTGGAGAGAGCTAGAGTTTCACTGCAGATGATTCGATATCTGGCCTTAGATGAGGCAGATCGGATGCTGGATATGGGTTTTGAACCGCAAATAAGGAAGATTGTTCAACAAATGGACATGCCTCCACCTGGTGTTAGACAGACTATGTTGTTCAGTGCCACATTTCCGAAAGAGATACAGAGATTGGCTTCTGATTTCCTTTCAAAATATATTTTCCTCGCTGTTGGAAGAGTGGGTTCAAGTACTGATTTAATTGTCCAGAGAGTCGAGTATGTTCAAGAGTCTGACAAGAGAAGTCACCTGATGGATCTTCTTCATGCACAGAGGGCAAATGGTGTACAAGGAAAGCAAGCCTTGACTTTAGTTTTTGTGGAGACGAAGAAGGGAGCTGATTCCCTGGAACACTGGTTGTGTCTTAATGGTTTTCCTGCAACTACTATTCATGGTGACAGGTCACAGCAGGAAAGAGAATTAGCATTGAGGTCATTTAAAAGTGGCAAAACCCCCATATTGGTTGCCACTGATGTTGCTGCACGTGGTCTTGACATTCCCCATGTTGCTCATGTGGTCAACTTTGACCTGCCAAATGATATTGATGATTATGTACACCGTATTGGTAGAACAGGTCGAGCAGGAAAGAAAGGCCTTGCTACTGCATTCTTTAATGATAACAATTCATCACTTGCTAGAGCTTTAGCAGATCTGATGCAAGAAGCAAATCAAGAAGTACCTGCTTGGCTCTCACGGTATGCTGCTCGTTCTTCTTTTGGTGGAGGGAGGAACCGCCGTTCAGGTGGTCGATTTGGTAGTCGCGACTTTCGAAGAGAGGGCTCTTTCAATAGAGGTTCCTCAGATTACTACAGTGCAGGAAACAGCAGTGGTGGATATGGAGGCTCTGGTGGATATGCTGGTGGAGGGTATGGTCCTGGGGTCACTAGTGCATGGGACTAA | 1809 | 0.4605 | MRSSWADMAANSAAENADTGSSANNGETGSTLAPSRPVYVPPHLRNRQPSAESPAPTYSGPSTGSAGSSSGAGNLGSRWSAPRNDYRSGGWDRGREREVNPFGDEDTAEEGASSEQENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRHTIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGQPVQRPARGVRTAHPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQRLASDFLSKYIFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADSLEHWLCLNGFPATTIHGDRSQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNSSLARALADLMQEANQEVPAWLSRYAARSSFGGGRNRRSGGRFGSRDFRREGSFNRGSSDYYSAGNSSGGYGGSGGYAGGGYGPGVTSAWD | 602 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca09g01871 | 602 | MobiDBLite | consensus disorder prediction | 88 | 104 | - | - | |
Cca09g01871 | 602 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 143 | 171 | IPR014014 | GO:0003724 | |
Cca09g01871 | 602 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 58 | 573 | - | - | |
Cca09g01871 | 602 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE-LIKE PROTEIN | 58 | 573 | - | - | |
Cca09g01871 | 602 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 370 | 537 | IPR001650 | - | |
Cca09g01871 | 602 | MobiDBLite | consensus disorder prediction | 50 | 77 | - | - | |
Cca09g01871 | 602 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 174 | 359 | IPR014001 | - | |
Cca09g01871 | 602 | Gene3D | - | 100 | 361 | IPR027417 | - | |
Cca09g01871 | 602 | CDD | SF2_C_DEAD | 371 | 507 | - | - | |
Cca09g01871 | 602 | Gene3D | - | 362 | 541 | IPR027417 | - | |
Cca09g01871 | 602 | MobiDBLite | consensus disorder prediction | 1 | 120 | - | - | |
Cca09g01871 | 602 | Pfam | Helicase conserved C-terminal domain | 383 | 498 | IPR001650 | - | |
Cca09g01871 | 602 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 223 | 515 | IPR027417 | - | |
Cca09g01871 | 602 | SMART | ultradead3 | 162 | 374 | IPR014001 | - | |
Cca09g01871 | 602 | SMART | helicmild6 | 417 | 498 | IPR001650 | - | |
Cca09g01871 | 602 | Pfam | DEAD/DEAH box helicase | 167 | 348 | IPR011545 | GO:0003676|GO:0005524 | |
Cca09g01871 | 602 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Cca09g01871 | 602 | MobiDBLite | consensus disorder prediction | 542 | 562 | - | - | |
Cca09g01871 | 602 | CDD | DEADc_DDX3_DDX4 | 144 | 365 | IPR044763 | GO:0003724|GO:0005524 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca09g01871 | Cca-Chr9 | 43500999 | 43507072 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca09g01871 | 141 | 530 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 31.969 | 2.24e-62 | 210 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca09g01871 | K11594 | - | gmx:100795756 | 1003.82 |