Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01871 ATGCGATCTTCATGGGCTGATATGGCTGCAAATTCTGCAGCTGAAAATGCTGATACCGGTTCTTCTGCTAACAATGGGGAAACTGGTAGCACATTAGCTCCTTCGCGGCCAGTTTATGTTCCTCCCCATCTGAGGAACCGCCAGCCATCGGCGGAATCCCCTGCCCCAACATATAGTGGCCCTTCTActggttctgctggctctagttctggtgctggtAATTTGGGATCCCGTTGGTCTGCACCCAGAAATGATTATCGTTCTGGTGGCTGGGATCGTGGCCGGGAGCGGGAAGTCAATCCTTTTGGAGACGAGGATACTGCTGAAGAAGGGGCATCTAGTGAGCAGGAGAATACAGGAATAAATTTTGATGCCTATGAAGATATTCCAGTGGAGACCAGTGGTGAAAATGTGCCTCCACCTGTGAATACATTTGCAGAGATTGACTTGGGTGAAGCACTTAATCAGAATATAAGAAGGTGCAAATACGTGAAGCCAACTCCTGTTCAGCGGCATACCATTCCAATTTCCCTCGCTGGACGTGATTTGATGGCTTGTGCGCAGACTGGTTCTGGAAAGACAGCTGCATTCTGTTTCCCAATTATCAGTGGAATTATGAGGGGCCAACCCGTACAGAGGCCAGCTCGTGGGGTGCGTACAGCGCATCCGCTTGCGCTTGTTCTTTCTCCAACTAGGGAACTATCAATGCAAATACATGAAGAGGCTAGAAAGTTTTCATACCAAACTGGGGTTAGGGTGGTTGTTGCTTATGGTGGAGCACCAATAAATCAGCAGCTGCGGGATCTTGAAAGAGGGGTGGACATTCTTGTTGCAACTCCTGGAAGACTGGTAGATTTGCTGGAGAGAGCTAGAGTTTCACTGCAGATGATTCGATATCTGGCCTTAGATGAGGCAGATCGGATGCTGGATATGGGTTTTGAACCGCAAATAAGGAAGATTGTTCAACAAATGGACATGCCTCCACCTGGTGTTAGACAGACTATGTTGTTCAGTGCCACATTTCCGAAAGAGATACAGAGATTGGCTTCTGATTTCCTTTCAAAATATATTTTCCTCGCTGTTGGAAGAGTGGGTTCAAGTACTGATTTAATTGTCCAGAGAGTCGAGTATGTTCAAGAGTCTGACAAGAGAAGTCACCTGATGGATCTTCTTCATGCACAGAGGGCAAATGGTGTACAAGGAAAGCAAGCCTTGACTTTAGTTTTTGTGGAGACGAAGAAGGGAGCTGATTCCCTGGAACACTGGTTGTGTCTTAATGGTTTTCCTGCAACTACTATTCATGGTGACAGGTCACAGCAGGAAAGAGAATTAGCATTGAGGTCATTTAAAAGTGGCAAAACCCCCATATTGGTTGCCACTGATGTTGCTGCACGTGGTCTTGACATTCCCCATGTTGCTCATGTGGTCAACTTTGACCTGCCAAATGATATTGATGATTATGTACACCGTATTGGTAGAACAGGTCGAGCAGGAAAGAAAGGCCTTGCTACTGCATTCTTTAATGATAACAATTCATCACTTGCTAGAGCTTTAGCAGATCTGATGCAAGAAGCAAATCAAGAAGTACCTGCTTGGCTCTCACGGTATGCTGCTCGTTCTTCTTTTGGTGGAGGGAGGAACCGCCGTTCAGGTGGTCGATTTGGTAGTCGCGACTTTCGAAGAGAGGGCTCTTTCAATAGAGGTTCCTCAGATTACTACAGTGCAGGAAACAGCAGTGGTGGATATGGAGGCTCTGGTGGATATGCTGGTGGAGGGTATGGTCCTGGGGTCACTAGTGCATGGGACTAA 1809 0.4605 MRSSWADMAANSAAENADTGSSANNGETGSTLAPSRPVYVPPHLRNRQPSAESPAPTYSGPSTGSAGSSSGAGNLGSRWSAPRNDYRSGGWDRGREREVNPFGDEDTAEEGASSEQENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRHTIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGQPVQRPARGVRTAHPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQRLASDFLSKYIFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADSLEHWLCLNGFPATTIHGDRSQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNSSLARALADLMQEANQEVPAWLSRYAARSSFGGGRNRRSGGRFGSRDFRREGSFNRGSSDYYSAGNSSGGYGGSGGYAGGGYGPGVTSAWD 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01871 602 MobiDBLite consensus disorder prediction 88 104 - -
Cca09g01871 602 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 143 171 IPR014014 GO:0003724
Cca09g01871 602 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 58 573 - -
Cca09g01871 602 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE-LIKE PROTEIN 58 573 - -
Cca09g01871 602 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 370 537 IPR001650 -
Cca09g01871 602 MobiDBLite consensus disorder prediction 50 77 - -
Cca09g01871 602 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 174 359 IPR014001 -
Cca09g01871 602 Gene3D - 100 361 IPR027417 -
Cca09g01871 602 CDD SF2_C_DEAD 371 507 - -
Cca09g01871 602 Gene3D - 362 541 IPR027417 -
Cca09g01871 602 MobiDBLite consensus disorder prediction 1 120 - -
Cca09g01871 602 Pfam Helicase conserved C-terminal domain 383 498 IPR001650 -
Cca09g01871 602 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 223 515 IPR027417 -
Cca09g01871 602 SMART ultradead3 162 374 IPR014001 -
Cca09g01871 602 SMART helicmild6 417 498 IPR001650 -
Cca09g01871 602 Pfam DEAD/DEAH box helicase 167 348 IPR011545 GO:0003676|GO:0005524
Cca09g01871 602 MobiDBLite consensus disorder prediction 1 32 - -
Cca09g01871 602 MobiDBLite consensus disorder prediction 542 562 - -
Cca09g01871 602 CDD DEADc_DDX3_DDX4 144 365 IPR044763 GO:0003724|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01871 Cca-Chr9 43500999 43507072 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01871 141 530 Eukaryotic Initiation Factors Gene Family AT3G19760 31.969 2.24e-62 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01871 K11594 - gmx:100795756 1003.82