Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01870 ATGCGAACTTCATGGGCAGATTTGGCTGCAAATTCTGCAGCTGAAAATGCAGGTACTTGGTCTTCTGCTAACAATGTGGGAACTGGTAGTACTGTAGCTCCTTCGCGGCCTGTTTATGTTCCTCCCCATCTGAGGAATCGCCAGCCATCAGCAGAATCCCCTGCTCCAACATATAGTGACCCTTCttcaggttctgctggctctagttctggtgctggtAATTCTGGATCCCGTTGGCCTGTACCCAGAAATGATTATCGGTCTGGGTTTGGTGGTGGTGGACGAGCAGGTGGATGGGGAAACAAAAGTAGTGGCTGGGATCGTGGCCGGGAGCGGGAAGTCAATCCTTTTGGAGACGAGGATACTGCTGAAGAAGGGGCATCTAGTGAGCAGGAGAATACAGGAATAAATTTTGATGCCTATGAAGATATTCCAGTGGAGACCAGCGGTGAAAATGTGCCCCCACCTGTGAATACATTTGCAGAGATTGACTTGGGTGAAGCACTTAATCAGAATATAAGAAGGTGCAAATACGTGAAGCCAACTCCTGTTCAGCGGCATACCATTCCAATTTCCCTCGCTGGACGTGATTTGATGGCTTGTGCGCAGACTGGTTCTGGAAAGACAGCTGCATTCTGTTTCCCGATTATCAGTGGAATTATGAGGGGCCAACCTGCGCAGAGGCCACCTCGTGGGGTGCGTACAGCACATCCGCTTGCGCTTGTTCTTTCTCCAACTAGGGAACTATCAATGCAAATACATGAAGAGGCTAGAAAGTTTTCATACCAAACTGGGGTTAGGGTGGTTGTTGCTTATGGTGGAGCACCGATAAATCAGCAGCTGCGGGATCTTGAAAGAGGGGTGGACATACTTGTTGCAACTCCTGGGAGACTGGTAGATTTGCTGGAGAGAGCTAGAGTTTCACTGCAGATGATTCGATATCTGGCCTTAGATGAGGCAGACCGGATGCTAGATATGGGTTTTGAGCCGCAAATAAGGAAGATTGTAGAACAAATGGACATGCCTCCGCCAGGTGTCAGACAGACTATGTTGTTCAGTGCAACATTTCCAAGAGAGATACAGAGATTGGCTTCTGATTTCCTTTCAAATTATATTTTCCTGGCTGTTGGAAGAGTGGGTTCAAGTACTGATTTAATTGTCCAAAGAGTTGAGTATGTTCAAGAGTCTGACAAGAGAAGTCACCTAATGGATCTTCTTCATGCTCAGAGGGCAAATGGTGTACATGGAAAGCAAGCTTTGACTTTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATTCCCTGGAACACTGGTTGTGTCTTAATGGTTTTCCTGCAACTACTATTCATGGTGACAGGTCACAGCAGGAAAGAGAATTAGCATTGAGGTCATTTAAAAGTGGCAACACCCCCATATTGGTTGCCACTGATGTTGCTGCACGTGGTCTTGATATTCCTCATGTTGCTCATGTGGTCAACTTTGACCTGCCAAATGATATTGACGATTATGTACATCGCATTGGAAGAACAGGTCGAGCTGGAAAGAAAGGCCTCGCTACAGCATTCTTTAATGATAACAATTCATCACTAGCTAGAGCTTTAGCAGATCTGATGCATGAAGCGAATCAAGAAGTTCCTGCTTGGCTCTCACGGTATGCTGCTCGATCTTCTTTTGGTGGAGGGAGGAACCGCCGATCAGGTGGTCGATTTGGTAGTCGCGACTTTCGAAGAGAGGGTTCTTTCAATAGAGGTTCCTCAGATTACTACAGTGCAGGAAACAGCAGTGGTGGTTATGGAGGCTCTGGTGGGTATGCTGGTGGAGGGTATGGTCCTGGGGTCACTAGTGCATGGGACTGA 1854 0.4628 MRTSWADLAANSAAENAGTWSSANNVGTGSTVAPSRPVYVPPHLRNRQPSAESPAPTYSDPSSGSAGSSSGAGNSGSRWPVPRNDYRSGFGGGGRAGGWGNKSSGWDRGREREVNPFGDEDTAEEGASSEQENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRHTIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGQPAQRPPRGVRTAHPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGVRQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQRANGVHGKQALTLVFVETKKGADSLEHWLCLNGFPATTIHGDRSQQERELALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNSSLARALADLMHEANQEVPAWLSRYAARSSFGGGRNRRSGGRFGSRDFRREGSFNRGSSDYYSAGNSSGGYGGSGGYAGGGYGPGVTSAWD 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01870 617 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 238 530 IPR027417 -
Cca09g01870 617 MobiDBLite consensus disorder prediction 105 119 - -
Cca09g01870 617 CDD DEADc_DDX3_DDX4 159 380 IPR044763 GO:0003724|GO:0005524
Cca09g01870 617 CDD SF2_C_DEAD 386 522 - -
Cca09g01870 617 Pfam DEAD/DEAH box helicase 182 363 IPR011545 GO:0003676|GO:0005524
Cca09g01870 617 Gene3D - 115 376 IPR027417 -
Cca09g01870 617 Gene3D - 377 556 IPR027417 -
Cca09g01870 617 MobiDBLite consensus disorder prediction 50 77 - -
Cca09g01870 617 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 385 552 IPR001650 -
Cca09g01870 617 Pfam Helicase conserved C-terminal domain 398 513 IPR001650 -
Cca09g01870 617 SMART ultradead3 177 389 IPR014001 -
Cca09g01870 617 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 189 374 IPR014001 -
Cca09g01870 617 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 49 585 - -
Cca09g01870 617 MobiDBLite consensus disorder prediction 1 32 - -
Cca09g01870 617 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 158 186 IPR014014 GO:0003724
Cca09g01870 617 SMART helicmild6 432 513 IPR001650 -
Cca09g01870 617 MobiDBLite consensus disorder prediction 1 135 - -
Cca09g01870 617 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 52B-RELATED 49 585 - -
Cca09g01870 617 MobiDBLite consensus disorder prediction 557 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01870 Cca-Chr9 43489713 43497908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01870 156 545 Eukaryotic Initiation Factors Gene Family AT3G19760 31.218 2.80e-61 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01870 K11594 - gmx:100795756 1033.86