Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01863 ATGCGAACTTCATGGGCAGATTTGGCTGCAAATTCTGCAGCTGAAAATGCAGGTACTTGGTCTTCTGCTAACAATGTGGGAACTGGTAGTACTGTAGCTCCTTCGCGGCCTGTTTATGTTCCTCCCCATCTGAGGAATCGCCAGCCATCAGCAGAATCCCCTGCTCCAACATATAGTGACCCTTCttcaggttctgctggctctagttctggtgctggtAATTCTGGATCCCGTTGGCCTGTACCCAGAAATGATTATCGGTCTGGGTTTGGTGGTGGTGGACGAGCAGGTGGATGGGGAAACAAAAGTAGTGGCTGGGATCGTGGCCGGGAGCGGGAAGTCAATCCTTTTGGAGACGAGGATACTGCTGAAGAAGGGGCATCTAGTGAGCAGGAGAATACAGGAATAAATTTTGATGCCTATGAAGATATTCCAGTGGAGACCAGCGGTGAAAATGTGCCCCCACCTGTGAATACATTTGCAGAGATTGACTTGGGTGAAGCACTTAATCAGAATATAAGAAGGTGCAAATACGTGAAGCCAACTCCTGTTCAGCGGCATACCATTCCAATTTCCCTCGCTGGACGTGATTTGATGGCTTGTGCGCAGACTGGTTCTGGAAAGACAGCTGCATTCTGTTTCCCGATTATCAGTGGAATTATGAGGGGCCAACCTGCGCAGAGGCCACCTCGTGGGGTGCGTACAGCACATCCGCTTGCGCTTGTTCTTTCTCCAACTAGGGAACTATCAATGCAAATACATGAAGAGGCTAGAAAGTTTTCATACCAAACTGGGGTTAGGGTGGTTGTTGCTTATGGTGGAGCACCGATAAATCAGCAGGCCCTTCCCACTCTGGTGTAG 861 0.475 MRTSWADLAANSAAENAGTWSSANNVGTGSTVAPSRPVYVPPHLRNRQPSAESPAPTYSDPSSGSAGSSSGAGNSGSRWPVPRNDYRSGFGGGGRAGGWGNKSSGWDRGREREVNPFGDEDTAEEGASSEQENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRHTIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGQPAQRPPRGVRTAHPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQALPTLV 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01863 286 Gene3D - 114 283 IPR027417 -
Cca09g01863 286 MobiDBLite consensus disorder prediction 105 119 - -
Cca09g01863 286 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 189 286 IPR014001 -
Cca09g01863 286 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 48 280 - -
Cca09g01863 286 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 52B-RELATED 48 280 - -
Cca09g01863 286 MobiDBLite consensus disorder prediction 50 77 - -
Cca09g01863 286 Pfam DEAD/DEAH box helicase 182 280 IPR011545 GO:0003676|GO:0005524
Cca09g01863 286 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 140 281 IPR027417 -
Cca09g01863 286 MobiDBLite consensus disorder prediction 1 32 - -
Cca09g01863 286 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 158 186 IPR014014 GO:0003724
Cca09g01863 286 MobiDBLite consensus disorder prediction 1 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01863 Cca-Chr9 43445631 43446696 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01863 147 279 Eukaryotic Initiation Factors Gene Family AT1G72730 30.075 8.80e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01863 K11594 - ccaj:109791229 532.717