Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01859 ATGGCGGGCGTTTCTCTCAAGTGCGGAGACTGTGGGGCTCTGTTGAGGACCGTAGAAGAAGCCCAAGAGCACGCCGAACTCACTTCCCACTCCAACTTCTCCGAATGCACTGAACCCGTTCTCAACCTCGTTTGCACCGCTTGCTCCAAACCCTGCCGATCCAAAACCGAGAGCGATTTGCACACCAAGAGAACCGGCCACACTGAATTTGTCGATAGGACTTCCGAGGCGGTGAAGCCGATTAGTTTGGAGGCTCCGAAGGTCGATGCGACTTATTCGTCGGAAAACCCTTCCGCTGCTGCGTCTACTGACCAGAATGAAGAAATGGTTGTTCCTGAAGTGGACAAAAAGCTGCTCGAGGAACTTGAAACCATGGGATTTTCAACTGCAAGGGCAACGCGGGCGCTTCATTACTCTGGTAATGCTGGCCTTGAGGCTGCTGTAAGTTGGATAGTAGAGCATGAGAATGACCCTGACATAGATCAGATGCCCTTGGTGCCTGCCAACACCAAAATTGAGGCTGCTAAACCTTCTCTTACCCCAGAAGAACTGAAGGCCAAACAACAGGAACTAAGGGAGAGAGCTCGCAAGaagaaagaagaggaagaaaagagaacggaaagagaaagagaaaAGGAGAGAATTCGTATTGGCAAGGAGTTGCTGGAAGCAAAGAGGATTGAAGAAGAGAATGAAAGGAAACGGGTGTTGGCCTTGAGAAAAGCAGAGAAAGAGGAAGAGAGAAGGGCTAGGGAGAAAATCAAGCAAAAGTTGGAAGAAGACAAGGCAGAAAGAAGGAGGAGACTTGGATTGCCTCCAGAGGAACCTTCAGCAGCCAAACCATCTCCCGTTGTGGAGGAGAAAAAGGTGTGA 873 0.4811 MAGVSLKCGDCGALLRTVEEAQEHAELTSHSNFSECTEPVLNLVCTACSKPCRSKTESDLHTKRTGHTEFVDRTSEAVKPISLEAPKVDATYSSENPSAAASTDQNEEMVVPEVDKKLLEELETMGFSTARATRALHYSGNAGLEAAVSWIVEHENDPDIDQMPLVPANTKIEAAKPSLTPEELKAKQQELRERARKKKEEEEKRTEREREKERIRIGKELLEAKRIEEENERKRVLALRKAEKEEERRAREKIKQKLEEDKAERRRRLGLPPEEPSAAKPSPVVEEKKV 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01859 290 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 113 154 IPR015940 -
Cca09g01859 290 MobiDBLite consensus disorder prediction 172 215 - -
Cca09g01859 290 SMART uba_6 115 153 IPR015940 -
Cca09g01859 290 CDD UBA_PUB_plant 113 161 - -
Cca09g01859 290 MobiDBLite consensus disorder prediction 178 215 - -
Cca09g01859 290 Gene3D - 115 161 - -
Cca09g01859 290 PANTHER F13M7.16 PROTEIN 1 289 - -
Cca09g01859 290 Pfam UBA/TS-N domain 119 151 IPR015940 -
Cca09g01859 290 Coils Coil 227 264 - -
Cca09g01859 290 MobiDBLite consensus disorder prediction 232 273 - -
Cca09g01859 290 Coils Coil 184 216 - -
Cca09g01859 290 MobiDBLite consensus disorder prediction 232 290 - -
Cca09g01859 290 SUPERFAMILY UBA-like 101 167 IPR009060 GO:0005515
Cca09g01859 290 ProSitePatterns Zinc finger C2H2 type domain signature. 8 30 IPR013087 -
Cca09g01859 290 PANTHER F13M7.16 PROTEIN 1 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01859 Cca-Chr9 43400689 43410009 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01859 98 290 C2H2 Transcription Factor Family AT1G04850 77.551 9.29e-70 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01859 K24348 - gmx:100794687 459.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01859 09 43400689 43410009 Cca09g01859 09 43400689 43410009 ECH