Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01840 aTGCGGTGTTACGGCATAAGCATTCCGGGAAGCGAGCAGCGGTTCTGGGCGGCGGGGGGGAGTCGGGTGTTGGGCCGGCCCAGCGGGAGGCGGCCCTGGCCCAGGCCCAGTAGCCGAATCGCGTTTCCTCGGGCAACCCTAAGGGAGGGTTTGGTAATGGAAGTCAGCTTCTACGACCTATTGGGGATACCGGAATCGGGTTCCATCACGGAGATCAAGAGCGCGTACAAGCAACTCGCGCGCAAGTACCACCCTGACGTGTCGCCCCCCGATAGGGTGGAGGAGCACACCAAGAGGTTTATTCAGCTGCAGGAGGCCTACGAGACCTTGTCTGATCCCTCGCGAAGAGCCATGTACGACAGAGACATGGCCAAGGGCATTAGCTTCGCTTTCGCTGCTCGCCGACGCTATAACTATCACGACCAGGTGGTTGAACAAAAAAGTGAATGGAAAGGTCGGTGGCAAACTCAACTATCAGAGCTGAAGAGAAGAAGTAGCAGTAAGGATGCTGGAGGGAATATGTCATGGGCAGCTCGAATGCGCCAGCAGAGGGATGAATCATGA 564 0.5727 MRCYGISIPGSEQRFWAAGGSRVLGRPSGRRPWPRPSSRIAFPRATLREGLVMEVSFYDLLGIPESGSITEIKSAYKQLARKYHPDVSPPDRVEEHTKRFIQLQEAYETLSDPSRRAMYDRDMAKGISFAFAARRRYNYHDQVVEQKSEWKGRWQTQLSELKRRSSSKDAGGNMSWAARMRQQRDES 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01840 187 PANTHER CHAPERONE PROTEIN DNAJ 20, CHLOROPLASTIC 54 187 - -
Cca09g01840 187 MobiDBLite consensus disorder prediction 160 187 - -
Cca09g01840 187 Pfam DnaJ domain 57 120 IPR001623 -
Cca09g01840 187 ProSitePatterns Nt-dnaJ domain signature. 100 119 IPR018253 -
Cca09g01840 187 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 54 187 - -
Cca09g01840 187 SUPERFAMILY Chaperone J-domain 55 130 IPR036869 -
Cca09g01840 187 CDD DnaJ 57 112 IPR001623 -
Cca09g01840 187 SMART dnaj_3 55 115 IPR001623 -
Cca09g01840 187 Gene3D DnaJ domain 45 160 IPR036869 -
Cca09g01840 187 PRINTS DnaJ domain signature 58 76 IPR001623 -
Cca09g01840 187 PRINTS DnaJ domain signature 76 91 IPR001623 -
Cca09g01840 187 PRINTS DnaJ domain signature 95 115 IPR001623 -
Cca09g01840 187 PRINTS DnaJ domain signature 115 134 IPR001623 -
Cca09g01840 187 ProSiteProfiles dnaJ domain profile. 56 123 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01840 Cca-Chr9 43145474 43148390 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01840 58 120 C2H2 Transcription Factor Family AT1G74250 45.455 5.79e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01840 - - gmx:100101903 285.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01840 09 43145474 43148390 Cca09g01840 09 43145474 43148390 ECH