Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01826 ATGGACGGAGCACCTCCCTCCGCCGCCgccggaggtccggcgccgttccttctgaagacctacgacatggtggacgattcctccaccaacgacatcgtttcgtggagctctaccaacaacagcttcgtcgtttggaacccgcctgagttcgctcgccttctcctcccgacctatttcaagcacaacaacttctccagcttcatccgccagctcaatacctacGGATTTCGAAAAATACATCCAGAGCGATGGGAATTTGCTAATGATGAGTTTGTGAAAGATCAAAAGCATCTTCTCAAGAATATACATCGTAGGAAACCTATTCACAGTCATAGTCATCCTCCAGGTTCTCTTGTAGATCCAGAAAGGGCAGCATTTGAGGAAGAAATAGAGAAACTTTCCCGTGAGAAAACTTCTCTTGAATCCAATATTTATAGCTTCAAACAACATCACTCAACAGCAAAGCATCAACTAGAAGATTTTCTGCTGCGATTAGATGGTGTTGAGAAGAGGCAGAAACATTTACTGAACTTCTTTGAGAAGGCTCTTCAGAATCCTGCCTTTATTGAACATCTTTCACGCAAAATTGAGTCCATGGATTTATCGGCATATAATAAAAAAAGGAGATTGCCTCAGGTTGATCCCGTGCAACCAGTTGCTGAAAGTAGTTTTGTGGATAGTCATAGCAATTTTAGAATGGAATTTGGAAATGTTTTCCATCAAGATTTCTCAAGTAAACTCAGACTGGAATTGTCACCAGCTGTTTCAGATATGAATTTAGTATCACGTAGCACACAAAGTTCCAATGAAGATGGGGAAAGCCCACAGAAAAAGATGTCTGAAGTAGATCCAAAAGGAGTGCAGACAAGAACAGCTCTTACATTTGCACCTGAAACATTAGAGCTTGCAGATACAGGGGCTTCTTTTACCTTTAAGATGGATTCATGTTTGTCACGAAGAGAAACAACTGCTGAGAGCTCAAAACTGCATTCTTTGGAGCCAAGTAGTGAAGAAGGTGATAGTCATATATCCTGCCAACTAAATTTAACTCTGGCATCTTGTCCACTGCAAGTCAACAGAAATTCATACTCAGCCAGATCACCCCAAATTGACTGTCAAGAAATTGGCAAATTGGCAGAATCAAATTTTTTTGCCAATGGTAAAGAATCTGATAGTGGGGTTTCCTCAAACCGAAATGCAACTGCTGAAGCTACGAATTTAGCCTCATCACAGGAGGCTCCAAGCAACAACCAAGTTAACCCCGCTCCTCCAGGTAGAGTGAATGATGTTTTCTGGGAACAGTTTCTTACTGAAAGGCCAGGTTGTTCTGACAATGAAGAGGCAATATCCAACTATCGAGCAAACCCATATGATGAACAAGATGAAGGTCGGTCGGTTCATGGAATCTCTAAAAACATTAAGAACATGGACCAACTCACACTTTGA 1446 0.3513 MDGAPPSAAAGGPAPFLLKTYDMVDDSSTNDIVSWSSTNNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIHPERWEFANDEFVKDQKHLLKNIHRRKPIHSHSHPPGSLVDPERAAFEEEIEKLSREKTSLESNIYSFKQHHSTAKHQLEDFLLRLDGVEKRQKHLLNFFEKALQNPAFIEHLSRKIESMDLSAYNKKRRLPQVDPVQPVAESSFVDSHSNFRMEFGNVFHQDFSSKLRLELSPAVSDMNLVSRSTQSSNEDGESPQKKMSEVDPKGVQTRTALTFAPETLELADTGASFTFKMDSCLSRRETTAESSKLHSLEPSSEEGDSHISCQLNLTLASCPLQVNRNSYSARSPQIDCQEIGKLAESNFFANGKESDSGVSSNRNATAEATNLASSQEAPSNNQVNPAPPGRVNDVFWEQFLTERPGCSDNEEAISNYRANPYDEQDEGRSVHGISKNIKNMDQLTL 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01826 481 PRINTS Heat shock factor (HSF) domain signature 16 39 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca09g01826 481 PRINTS Heat shock factor (HSF) domain signature 54 66 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca09g01826 481 PRINTS Heat shock factor (HSF) domain signature 67 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca09g01826 481 SUPERFAMILY "Winged helix" DNA-binding domain 12 105 IPR036390 -
Cca09g01826 481 MobiDBLite consensus disorder prediction 388 423 - -
Cca09g01826 481 Coils Coil 123 143 - -
Cca09g01826 481 SMART hsfneu3 12 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca09g01826 481 MobiDBLite consensus disorder prediction 388 426 - -
Cca09g01826 481 Gene3D - 10 106 IPR036388 -
Cca09g01826 481 Pfam HSF-type DNA-binding 16 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca09g01826 481 MobiDBLite consensus disorder prediction 454 481 - -
Cca09g01826 481 MobiDBLite consensus disorder prediction 260 286 - -
Cca09g01826 481 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-5 10 477 - -
Cca09g01826 481 ProSitePatterns HSF-type DNA-binding domain signature. 55 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca09g01826 481 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 10 477 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01826 Cca-Chr9 42969888 42974228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01826 16 481 HSF AT4G13980 56.051 2.63e-173 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Cca09g01826 HSF_DNA-bind 2.6e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01826 K09419 - gmx:100816484 880.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01826 09 42969888 42974228 Cca09g01826 09 42969888 42974228 ECH