Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01817 ATGTCCTCCTTCAAAACCCTACTCTCCCTAGTCCTGGTTGTGGTCGTGGTCGTGGTCGCCGCCGATGATGCGGCGGTCATGTCAAATTTCCTTAAATCCCTCGCGCCACCACCCTCCGGGTGGTCCCAGTCAACCCCATTCTGCAAGTGGGAGGGAGTTCAATGCGATTCGAATAACCGCGTGATCAGCGTAAACCTCATGTCAATGTCCCTCACCGGAACGCTCCCCTCCGATCTCAATTCGCTCTCTCAACTCCACTCTCTCTCCCTCCAAGACAACGCGCTCTCCGGCACGATTCCCTCGCTCGCCAACCTCTCCGCCCTCCAAACCGTGTACCTCAACCGCAACAACTTCAGCGCCGTCTCCGCCGCCGCCTTCGCCGGCCTCACCGCGCTCCAAACCCTCAGCCTCGGCTCTAACCCTAGCCTTGCCCTGTGGACCTTCCCCGCCGACCTCGCTTCCTCCACCAACCTCGCCGAACTCGACCTCGCCACCGCGAGTCTCACCGGTTCCTTACCTGATATTTTCGACAAATTCGTCTCTCTCCAGAACCTTCGCCTCTCCTACAACAACCTCACCGGAATGTTACCAAATTCCCTCGCCGGCTCTTCAATTACGAAATTGTGGCTCAACAACCAGGCCACCGGGTTCACCGGCACCGTTCAGGTTATTTCCAACATGACACAATTGTCCCAGGCCTGGCTCCATACGAACCGGTTCACCGGTCCCATTCCGGATTTGTCGCAGTGCAAGAGCCTCTTTGATTTGCAGCTCCGGGACAACCAGTTAACCGGTTTGGTCCCTGGTTCCTTGATGAGTCTCTCGAGTTTGAAGAACGTTTCTCTGGATAATAACTTGCTTCAGGGCCCTGTGCCGGTGTTTGGGAGCGGCGTGCATGTTACTCTTAATGGGATCAATAGGTTTTGTTTAAACACTGCTGGGAATTGCGATCCCAGGGTGACGGTTTTGCTTAAGATTGCTGAGGGGTTTGGGTACCCTATTCAGCTGGCGAATTCGTGGAACGGGAATGATCCTTGTGATGGTTGGAATTTTGTGGTGTGTGCTGAGGGTAAGATTGTTACTGTGAATTTTGCTAAGCAGGGTTTTCAGGGTACCATCTCGCCTGCATTTGCCAATTTGACTGATTTGAGGAGTTTGTTTCTCAATGGGAATAATTTGACTGGTTCTATACCTGATAGTTTGACCACTTTGTCTCAGCTTGTGACTCTTGATGTGTCTGATAACAATCTCTCTGGAGAGGTTCCTAAGTTCGCGTCCAAGGTGAAGTTATTGACTGCGGGTAATGCTTTGCTTGGGAAGCCTCTTAGTCCTGGAAGTGGAGGTACTCCTTCAGGGTCACCGCCTGGTGGAAGTAGTGGGGGGTCTGCTAACGGTTCCTCTTCGTTGACGCCAGGTTGGAttgctggtatagttgttattgttgtgttttttattgctgtggtgttgttTGTGTCTTGGAAGTGTTATGCCAAGGGGCGGAAGAGGGTGTTCAAGAGGGTTAATGGTAGTGAAAATGGAAAAGAAGGATTTAAACTTGATGTTGTCAGTAGTGCTAATGGTGCTAATGGTCATCGACGTGCTCCCAGTGAGTTGCAAAGCCAGAGCAGTGGTGATCTTCGTGCTTTTGAAGGTGGGCATCCAACGATTCCCATCGAAGTTCTTCGCCAGGTGACAAATAATTTCAGTGAGGAGAACATTTTAGGCAGGGGAGGGTTTGGAGTGGTTTATAAGGGGGAGTTGCATGATGGAACGAAAATTGCTGTCAAGAGGATGGAATCTGTTGCTATGGGAAACAAAGGATTGAACGAGTTCCAAGCAGAGATTGCAGTTCTTAGTAAAGTTAGGCACAGACATTTGGTTGCTCTTTTAGGGTTTTGCATCAATGGCAATGAAAGGCTTTTGGTGTACGAGTATATGCCTCAAGGTACGTTAACACAGCACCTGTTTGAATGGCGTGAGCATGGGTATACACCTTTGACTTGGAAACAAAGGGTTGTCGTGGCTTTGGATGTAGCGCGAGGGGTGGAATACTTGCACAGCTTAGCTCAGCAAAGCTTCATTCATAGAGACTTAAAACCCTCAAACATACTACTAGGTGATGACATGAGAGCAAAGGTAGCAGATTTTGGGTTGGTTAAACATGCACCAGACGGGAAGTATTCTGTTGAGACACGGTTGGCTGGAACATTTGGATATCTTGCACCTGAGTATGCAGCTACTGGAAGAGTGACAACCAAAGTGGATGTTTATGCATTTGGAGTAGTTTTGATGGAACTTATCACCGGTAGAAAGGCATTGGATGATACTGTGCCGGATGAAAGGTCTCATTTGGTTACATGGTTCCGTCGGGTGCTAATTAACAAGGAAAACATTCCAAAGGCAATTGATCAAACTCTGGATCCTGACGAGGAAACCATGGTGAGCATATATAAAGTGGCTGAGCTGGCAGGCCATTGCACCAATCGTGAACCATACCAAAGGCCAGATATGGGTCATGCAGTGAATGTCTTGGTTCCTTTTGTGGAGCAATGGAAGCCTAGCCATGAAGAAGAGGACACCTCTGCCGATGACCTTCAGATGAACCTTCCTCAAGCTCTACGAAGGTGGCAAGCCAATGAAGGCACTTCCTCAACATTTAATGACATGTCCCTTACACAAACCCAATCAAGCATCCCCTTCAAACCTGCTGGATTTGCAGACACCTTTGATTCTATGGATGGCCGGTAA 2748 0.4858 MSSFKTLLSLVLVVVVVVVAADDAAVMSNFLKSLAPPPSGWSQSTPFCKWEGVQCDSNNRVISVNLMSMSLTGTLPSDLNSLSQLHSLSLQDNALSGTIPSLANLSALQTVYLNRNNFSAVSAAAFAGLTALQTLSLGSNPSLALWTFPADLASSTNLAELDLATASLTGSLPDIFDKFVSLQNLRLSYNNLTGMLPNSLAGSSITKLWLNNQATGFTGTVQVISNMTQLSQAWLHTNRFTGPIPDLSQCKSLFDLQLRDNQLTGLVPGSLMSLSSLKNVSLDNNLLQGPVPVFGSGVHVTLNGINRFCLNTAGNCDPRVTVLLKIAEGFGYPIQLANSWNGNDPCDGWNFVVCAEGKIVTVNFAKQGFQGTISPAFANLTDLRSLFLNGNNLTGSIPDSLTTLSQLVTLDVSDNNLSGEVPKFASKVKLLTAGNALLGKPLSPGSGGTPSGSPPGGSSGGSANGSSSLTPGWIAGIVVIVVFFIAVVLFVSWKCYAKGRKRVFKRVNGSENGKEGFKLDVVSSANGANGHRRAPSELQSQSSGDLRAFEGGHPTIPIEVLRQVTNNFSEENILGRGGFGVVYKGELHDGTKIAVKRMESVAMGNKGLNEFQAEIAVLSKVRHRHLVALLGFCINGNERLLVYEYMPQGTLTQHLFEWREHGYTPLTWKQRVVVALDVARGVEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKHAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMELITGRKALDDTVPDERSHLVTWFRRVLINKENIPKAIDQTLDPDEETMVSIYKVAELAGHCTNREPYQRPDMGHAVNVLVPFVEQWKPSHEEEDTSADDLQMNLPQALRRWQANEGTSSTFNDMSLTQTQSSIPFKPAGFADTFDSMDGR 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01817 915 SUPERFAMILY L domain-like 320 431 - -
Cca09g01817 915 Gene3D Ribonuclease Inhibitor 318 441 IPR032675 -
Cca09g01817 915 Pfam Leucine rich repeat N-terminal domain 321 354 IPR013210 -
Cca09g01817 915 Pfam Leucine rich repeat N-terminal domain 21 56 IPR013210 -
Cca09g01817 915 PANTHER RECEPTOR PROTEIN KINASE TMK1-RELATED 5 915 - -
Cca09g01817 915 CDD STKc_IRAK 574 844 - -
Cca09g01817 915 Gene3D Transferase(Phosphotransferase) domain 1 646 870 - -
Cca09g01817 915 MobiDBLite consensus disorder prediction 446 465 - -
Cca09g01817 915 Pfam Leucine rich repeat 84 141 IPR001611 GO:0005515
Cca09g01817 915 ProSitePatterns Serine/Threonine protein kinases active-site signature. 693 705 IPR008271 GO:0004672|GO:0006468
Cca09g01817 915 ProSiteProfiles Protein kinase domain profile. 568 848 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01817 915 PANTHER OSJNBA0070M12.3 PROTEIN 5 915 - -
Cca09g01817 915 ProSitePatterns Protein kinases ATP-binding region signature. 574 596 IPR017441 GO:0005524
Cca09g01817 915 SUPERFAMILY Protein kinase-like (PK-like) 555 861 IPR011009 -
Cca09g01817 915 SMART serkin_6 568 848 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01817 915 SMART LRR_typ_2 380 404 IPR003591 -
Cca09g01817 915 SMART LRR_typ_2 179 202 IPR003591 -
Cca09g01817 915 SMART LRR_typ_2 105 128 IPR003591 -
Cca09g01817 915 SMART LRR_typ_2 129 155 IPR003591 -
Cca09g01817 915 Pfam Protein tyrosine and serine/threonine kinase 571 842 IPR001245 GO:0004672|GO:0006468
Cca09g01817 915 Gene3D Phosphorylase Kinase; domain 1 529 645 - -
Cca09g01817 915 MobiDBLite consensus disorder prediction 441 465 - -
Cca09g01817 915 Gene3D Ribonuclease Inhibitor 22 315 IPR032675 -
Cca09g01817 915 SUPERFAMILY L domain-like 33 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01817 Cca-Chr9 42869298 42872897 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01817 45 861 Receptor kinase-like Gene Family AT5G49660 29.136 4.61e-94 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Cca09g01817 PK_Tyr_Ser-Thr 1.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01817 - - gmx:100286794 1371.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01817 09 42869298 42872897 Cca09g01817 09 42869298 42872897 ECH