Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01802 ATGGACGAGGATTTCGAGTTTCCAAGTGCTGGCAACATGGAAGTGCCTGAGGCTGAGGAGGAGATGGATATGGAGGTGGAGAGTCCGATCATGAAGGTTGGGGAGGAGAAGGAAATTGGGAAAAAGGGGTTGAAGAAGAAGCTGCTTAAGGAAGGTGAAGGATGGGATACCCCTAACAGTGGAGACCAAGTTGAGGTGCATTATATAGGAACCTTGCTTGATGGAACCCAATTTGATTCTAGCCGTGACAGGGGAACCCCTTTCAAGTTCAAGCTTGGCCAAGGGCAGGTGATCAAGGGATGGGATGAAGGTATCCAAACCATGAAGAAAGGAGAAAATGCCCTTTTCACAATACCCCCAGAATTGGCTTATGGAGAATCTGGGTCTCCTCCCACTATTCCCCCGAATGCAACTCTGCAGTTTGATGTGGAGTTGCTGTCTTGGACAAGTGTGAAGGACATATGCAAGGATGGAGGAATTTTGAAGAACATAATCACGGAAGGGGAGAAATGGGATAATCCTAAGGACCTGGATGAAGTGTTCGTTAAGTATGAAGCTCGGCTTGAAGATGGGACAGTCATTTCGAAATCTGATGGGGTGGAGTTCACTGTGGAAGAGGGGTATTTCTGTCCTGCTTTGGCCAAGGCTGTGAAGACAATGAAGATGGGAGAGAAAGTTCTCTTGAATGTGAAGCCACAATATGCATTTGGGGAGAGTGGAAGGCCAGCATCAGGAGATGAAGGTGGAGTGCCTCCAAATGCTTCGCTTCAAGTGGATCTTGAGTTGGTCTCTTGGAAGGCCGTGTCTGACATTACTAAGAATCGGAAGGTTCTAAAGAAGACTTTGAAGGAAGGAGAGGGATATGAACGACCAAATGATGGAGCTGTAGTTCAAGTGAAACTGATTGGCAAGCTGCAAGATGGAACTGTTTTCATTAAGAAGGGCCACGATAATGAACAGCCATTTGAGTTCAAAATTGATGAAGAGCAAGTAATTGAGGGACTTGATAAAGCTGTAAAGAACATGAAGAAAGGGGAAACTGCACTGGTGATCATACAGCCTGAATATGCTTTTGGTTCATCTGCGTCGCCTCAGGAATTGGCCAATGTTCCTCCCAATTCTACTGTATACTATGAAGTTGAGCTGCTTTCATTTGTAAAGGAGAAGGAATCTTGGGATCTGAATACACAAGAGAAGATTGAGGCAGCTGGTAAGAAAAAGGAAGAAGGGAATGCTTTATTCAAGGTTGGCAAATATGAAAGAGCGTCAAAAAGATATGAAAAGGCCATAAAATATATCGAGTATGATTCCTCCTTCAATGATGAGGAGAAACAACAGACTAAGGCATTGAAAATTACATGCAATCTAAATAATGCAGCCTGTAAGTTGAAGCTAAAGGACTACAAACAGGCAGAGAAGATGTGCACTAAGGTGTTGGAGCTTGATAGTAGGAATGTAAAAGCACTGTATCGGAGGGCGCAAGCATATATTCATCTTGTGGACTTGGACCTAGCTGAGATGGATATTAAGAAAGCCCTTGAGATTGAGCCAGACAACAGGGATATAAAGATTGAGTACAAAATCTTGAAGGAGAAAGTGAAGGAATACAACAAGAAGGACGCACAGTTTTACGGCAGCATATTTGCTAAAATGAATAAACTAGAACAAGCAAGAACAGTAAAGCAGGAGCCTGTGCCAATGTCTATCGACAGTAAAGCTTAA 1722 0.4361 MDEDFEFPSAGNMEVPEAEEEMDMEVESPIMKVGEEKEIGKKGLKKKLLKEGEGWDTPNSGDQVEVHYIGTLLDGTQFDSSRDRGTPFKFKLGQGQVIKGWDEGIQTMKKGENALFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGILKNIITEGEKWDNPKDLDEVFVKYEARLEDGTVISKSDGVEFTVEEGYFCPALAKAVKTMKMGEKVLLNVKPQYAFGESGRPASGDEGGVPPNASLQVDLELVSWKAVSDITKNRKVLKKTLKEGEGYERPNDGAVVQVKLIGKLQDGTVFIKKGHDNEQPFEFKIDEEQVIEGLDKAVKNMKKGETALVIIQPEYAFGSSASPQELANVPPNSTVYYEVELLSFVKEKESWDLNTQEKIEAAGKKKEEGNALFKVGKYERASKRYEKAIKYIEYDSSFNDEEKQQTKALKITCNLNNAACKLKLKDYKQAEKMCTKVLELDSRNVKALYRRAQAYIHLVDLDLAEMDIKKALEIEPDNRDIKIEYKILKEKVKEYNKKDAQFYGSIFAKMNKLEQARTVKQEPVPMSIDSKA 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01802 573 Pfam Tetratricopeptide repeat 487 519 IPR019734 GO:0005515
Cca09g01802 573 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 12 272 - -
Cca09g01802 573 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 276 385 - -
Cca09g01802 573 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 386 556 - -
Cca09g01802 573 MobiDBLite consensus disorder prediction 1 25 - -
Cca09g01802 573 Gene3D - 267 388 IPR046357 GO:0003755
Cca09g01802 573 ProSiteProfiles TPR repeat profile. 486 519 IPR019734 GO:0005515
Cca09g01802 573 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 174 263 IPR001179 GO:0003755
Cca09g01802 573 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 288 383 IPR001179 GO:0003755
Cca09g01802 573 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 57 146 IPR001179 GO:0003755
Cca09g01802 573 SUPERFAMILY TPR-like 392 552 IPR011990 GO:0005515
Cca09g01802 573 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 177 266 IPR001179 GO:0003755
Cca09g01802 573 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 294 386 IPR001179 GO:0003755
Cca09g01802 573 SUPERFAMILY FKBP-like 38 160 - -
Cca09g01802 573 Gene3D - 154 266 IPR046357 GO:0003755
Cca09g01802 573 Gene3D Tetratricopeptide repeat domain 389 546 IPR011990 GO:0005515
Cca09g01802 573 Gene3D - 32 153 IPR046357 GO:0003755
Cca09g01802 573 PANTHER PEPTIDYLPROLYL ISOMERASE 12 272 - -
Cca09g01802 573 PANTHER PEPTIDYLPROLYL ISOMERASE 276 385 - -
Cca09g01802 573 PANTHER PEPTIDYLPROLYL ISOMERASE 386 556 - -
Cca09g01802 573 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 61 149 IPR001179 GO:0003755
Cca09g01802 573 SMART tpr_5 403 436 IPR019734 GO:0005515
Cca09g01802 573 SMART tpr_5 452 485 IPR019734 GO:0005515
Cca09g01802 573 SMART tpr_5 486 519 IPR019734 GO:0005515
Cca09g01802 573 SUPERFAMILY FKBP-like 153 268 - -
Cca09g01802 573 Coils Coil 519 539 - -
Cca09g01802 573 SUPERFAMILY FKBP-like 269 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01802 Cca-Chr9 42711897 42715541 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01802 28 573 Calmodulin-binding Proteins AT5G48570 75.774 0.0 862
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01802 K09571 - gmx:100810243 1004.59