Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01792 ATGGGCATGCTCAAAACACTAGAGAGGTACCAGAAATGTAACTATGGTGCGCCTGAGGCTAATGTGTCTACACGGGAAGCCTTGGTAATGGAGTTGAGCAGCCAACAGGAGTACTTGAAGCTGAAGGCACGTTATGAGGCCCTACAACGGTCCCAGAGGAACCTCATGGGAGAAGATCTTGGCCCTCTAAACAGCAAAGAGCTCGAGTCTCTTGAAAGGCAGCTAGATTCGTCCTTGAAGCAAATCAGATCGACAAGGACCCAGTTCATGCTGGATCAGCTCTCTGATCTTCAACGTAAGGAACACTTACTAAGTGAGGCTAACAGGTCTCTCAGACAAAGGCAGTTAGAAGGGTATCAAATAAATCCACTCCAACTGAATCCCGGTGTAGAAGACATGGGATATGGCAGGCATCCATCTCAAACTCAGGGTGATGCCCTCTTTCAACCATTGGAGTGTGAGCCAACCTTACAAATTGGTTATCAACCTGATCCAGTATCAGTGGTGACAGCAGGGCCAAGCATGAGCAATTACATGGCAGGGTGGTTACCTTAG 555 0.4811 MGMLKTLERYQKCNYGAPEANVSTREALVMELSSQQEYLKLKARYEALQRSQRNLMGEDLGPLNSKELESLERQLDSSLKQIRSTRTQFMLDQLSDLQRKEHLLSEANRSLRQRQLEGYQINPLQLNPGVEDMGYGRHPSQTQGDALFQPLECEPTLQIGYQPDPVSVVTAGPSMSNYMAGWLP 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01792 184 Coils Coil 68 88 - -
Cca09g01792 184 Coils Coil 94 114 - -
Cca09g01792 184 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 3 171 - -
Cca09g01792 184 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 171 - -
Cca09g01792 184 Pfam K-box region 33 114 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca09g01792 184 ProSiteProfiles K-box domain profile. 31 122 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01792 Cca-Chr9 42574302 42578236 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01792 3 184 MADS-box Gene Family AT1G24260 66.486 2.56e-73 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01792 - - gmx:100778931 348.977