Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01791 atgggaagaggaagagtggagttgaagagaattgagaacaagatcaacaggcaagtgaccttcgctaagcgaagaaacggacttttgaagaaagcttatgagctttccgttctctgcgatgccgaagttgctctcatcatcttctccaatagaggaaaattgtacgagttttgcagcagttcaagCATGCTCAAAACGCTTGAGAGGTACCAGAAATGTAATTATGGTGCCCCTGAGAATAATGTGTCTACACGGGAAGCCTTGGTAATGGAATTAAGCAGCCAGCAGGAGTACTTGAAGCTGAAGGCACGTTATGAGGCCCTACAACGATCCCAGAGGAACCTCATGGGAGAAGATCTTGGCCCTCTAAACAGTAAAGAGCTCGAGTCTCTTGAAAGACAGCTTGATTCGTCCTTGAAGCAAATCAGATCAACAAGGACCCAGTTCATGCTGGATCAGCTCTCTGATCTTCAACACAAGGAAAACTTACTATGTGAGGCTAATAGGTCTCTCAGACAAAGGCAGTTGGAAGGGTATGAAATAAATCCACTCCAACTGAATCCCAGTGTTGAAGATATGGGATATGGCCGCCATCCGTCGCAAACTCACGGTGACCTCTTTCAACCACTAGAGTGTGAGCCAACGTTACAAATTGGATATCAGGCTGATACAGTGTCAGTGGTGACAGCTGGCCCAAGCATGAGCAATTACATGGCAGGATGGTTACCTTAA 732 0.347 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPENNVSTREALVMELSSQQEYLKLKARYEALQRSQRNLMGEDLGPLNSKELESLERQLDSSLKQIRSTRTQFMLDQLSDLQHKENLLCEANRSLRQRQLEGYEINPLQLNPSVEDMGYGRHPSQTHGDLFQPLECEPTLQIGYQADTVSVVTAGPSMSNYMAGWLP 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01791 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cca09g01791 243 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 1 230 - -
Cca09g01791 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cca09g01791 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cca09g01791 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cca09g01791 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cca09g01791 243 Pfam K-box region 93 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca09g01791 243 ProSiteProfiles K-box domain profile. 91 182 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca09g01791 243 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Cca09g01791 243 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Cca09g01791 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cca09g01791 243 Coils Coil 128 148 - -
Cca09g01791 243 Gene3D - 13 114 IPR036879 GO:0003677|GO:0046983
Cca09g01791 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 230 - -
Cca09g01791 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01791 Cca-Chr9 42558407 42568737 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01791 1 243 MADS-box Gene Family AT1G24260 74.089 2.52e-121 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Cca09g01791 K-box 3.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01791 - - gmx:100778931 446.432