Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01788 ATGACACCTGGTCACGAATATGATATTAATGATTTGCATCAAGAGGCTCAAGCCAGATGGCTGAAGCCTGCAGAAGTGATGTACATTTTACAGAATCATGAGAAGTACCAGTTCGCCCAAGAGCCCCCGCAACAGCCAACCAGTGGATCCCTGTTTCTGTTTAACAAAAGAGTCCTGCGTTTCTTCCGCAAAGATGGCCATAACTGGCGCAAGAAAAGAGATGGAAGAACTGTGGGAGAAGCACATGAACGGCTGAAGGTTGGAAATGTTGAAGCCTTAAATTGTTATTATGCACACGGAGAACAGATCCCTAGTTTCCAGAGGCGGAGCTATTGGATGTTGGATCCGGCGTATGAGCATATTGTTCTTGTGCATTATAGAGACACAAGCGAGGGAAGGCTCGGTTCCGGCGCTGGTGCACAATTCTCACCAGGTTCTTCTTCTGCATATAATCAAAGTCCTAGCCCTTATTCTACTCAGAATCCAGGGTCAACATCGATATTTGGTGATTCATATGAACCTAATCAGAGTTTATCCAGTTCTGGATCTGCAGAAGTTACCTCTGATGTATACATTCCGAACAATAAAATGGGTCACATGGATGGAACAGATGCAGACTCAGGAGCCTCAACTGAACTTGAGGTTACTCAAGCTTTGCGCCGATTGGAGGAGCAGTTAAGTTTGAATGAGGACAACTTTAAAGAAATTGCTCCCTTCTGCATTAATGATGAAACTGGACATGATTCAAACCCTCAGCACAATCAAGGGATGATCAGAAATCAAGAGCAATCTGCTACTTTCCCTGGACCAGATGATCAAGGGTTATTTTATGATGGATATAATGGAAGGCAAGGCGATGGGGGTGAATGTTATCATGAATTAATAGACAATGGGTACCGTGATGCTAATGAAAAGGCTATCTGGACAGGGGTGCTGGAATCATGCAAGTCCTCATCTGCAGTCAAGTTACCACAGAAAAATGTATACATGCCAACTGGAAATGAAAATTCTCTATCTTCTTCAAGAACGGTACCAGTTTCCAACCAGGAAAACAGTCACTGGCTAAACTTCAACAGTAATAATGCTGAAAACTCTGTTTTCTCGATACCTCAAGGTGTTGATGGAGTCAAATTTCCTACATATTCTATTGTGGAAACGCGAGGAATTAATTCTAACTACTATGAAACATTTTTTCACCAAAACCAAATTGTAACACCTCCAGATGCAGATTCAAGTTTGACAGTAGCACAAAAACAGAAATTTACCATTAAGAAGATCTCCCCAGAATGGGGTTATGCCACCGAGAATACTAAGGTTATCATTGTTGGGTCATTTTTCTGTAATCCCTCGGAGTCTTCTTGGGCTTGTATGCTTGGCGATATTGAAGTTCCTGTTGAGATAATTCAGGATGGTGTAATCTGTTGTGAAGCTCCATCTCACCTTCCCGGAAAGGTTACTCTGTGCATTACTTCTGGAAACCGGGAGTCCTGTAGTGAAGTCAGAGAGTTTGAATATCGTAATAAGGCCAATAGTTGCACCCGATGTACTCAATTGGAAACAGAAGCCACTAGAAGTCCAGAAGAGTTGTTATTGCTTGTTAGATTAGGGCAGATGCTTCTTTCTGAATCAACAACAAAGAATGACAACATAGAATCTGGAATTCCTCTCATAAAACAGAAAGCTGATGATGATTCATGGAGCCATATTATAGAGGCTCTTCTAGTTGGCAGTGGAACATCCACGGGTACTATTGATTGGATTCTTGAAGAGCTTCTAAAGGATAAGCTGCAACAGTGGCTTTCTTGCAGATCTCAGGAAAGAGATGAAGAGACAGGTTGTTCTTTGTCCAAGAAGGAGCAGGGGATTATTCACATGGTTGCTGGGTTGGGCTATGAGTGGGCCTTGAATCCTATTCTGAGTTGTGGAGTGAATATAAATTTCCGTGACATCAATGGATGGACTGCTCTTCATTGGGCTGCACGTTTTGGAAGGGAAAAAACGGTTGCTTCACTTATAGCTTCTGGAGCATCTGCTGGAGCTGTGACAGACCCAAGTGCACAAGATCCAATCGGTAGAACCGCTGCATCTATTGCAGCCAGCAGTGGGCACAAGGGACTGGCAGGGTATCTTTCAGAGGTAGCTGTAACAAGTCATCTGTCATCGCTTACTCTGCAAGAGACTGAGCTATCTAAGAGTTCTGCTGAGCTTCATGCAGACATGACTGTTAACAGTGTCTCCAAGGATAATCTTGCTGCCAGTGATCAGACGTCTCTCAAAGATACATTGGCTGCTATCAGAAATGTAACTCAGGCAGCTGCGCGGATACAATCAGCTTTTCGCTCACATTCGTTTAGAAAACGGAGAGCAAGAGAAGCAGCTGCAAGTACCGGTGGCATTGGTAGCATTTCGGAGATTTCTGCTATGTCAAAACTTGCCTTTCGGAACTCTCGCGAAGATAATTCAGCTGCTTTATCAATTCAGAAGAAATATCGAGGTTGGAAAGGTCGTAAAGATTTCTTAGCGTTGCGCCAAAAAGTAGTGAAGATACAGGCTCATGTGAGGGGCTACCAGGTTAGGAAGCATTACAAGGTATTATGGGCGGTCGGAATCTTGGATAAGGTGGTGCTACGATGGAGGAGAAAAGGAGCTGGTTTACGAGGTTTCCGACAAGAGATGGACAGTAATGAAAATGAAGATGAAGATGAAGATATTCTCAAGGTGTTCCGAAAACAGAAAGTGGATGTAGAAATTGAAGAAGCTGTTTCCCGAGTTCTGTCCATGGTCGACTCACCGGATGCTCGGGAGCAATATCATCGCATGCTTGAGAAATATCGTCAGGCTAAGGCTGAACTTGCGGGCACGAGTGATGAAGCATCATTATCAACTTCTGTAGGAGATGCCTTGTTTATGGAAGATGATTTTTATCCATTTCACTAG 2937 0.4341 MTPGHEYDINDLHQEAQARWLKPAEVMYILQNHEKYQFAQEPPQQPTSGSLFLFNKRVLRFFRKDGHNWRKKRDGRTVGEAHERLKVGNVEALNCYYAHGEQIPSFQRRSYWMLDPAYEHIVLVHYRDTSEGRLGSGAGAQFSPGSSSAYNQSPSPYSTQNPGSTSIFGDSYEPNQSLSSSGSAEVTSDVYIPNNKMGHMDGTDADSGASTELEVTQALRRLEEQLSLNEDNFKEIAPFCINDETGHDSNPQHNQGMIRNQEQSATFPGPDDQGLFYDGYNGRQGDGGECYHELIDNGYRDANEKAIWTGVLESCKSSSAVKLPQKNVYMPTGNENSLSSSRTVPVSNQENSHWLNFNSNNAENSVFSIPQGVDGVKFPTYSIVETRGINSNYYETFFHQNQIVTPPDADSSLTVAQKQKFTIKKISPEWGYATENTKVIIVGSFFCNPSESSWACMLGDIEVPVEIIQDGVICCEAPSHLPGKVTLCITSGNRESCSEVREFEYRNKANSCTRCTQLETEATRSPEELLLLVRLGQMLLSESTTKNDNIESGIPLIKQKADDDSWSHIIEALLVGSGTSTGTIDWILEELLKDKLQQWLSCRSQERDEETGCSLSKKEQGIIHMVAGLGYEWALNPILSCGVNINFRDINGWTALHWAARFGREKTVASLIASGASAGAVTDPSAQDPIGRTAASIAASSGHKGLAGYLSEVAVTSHLSSLTLQETELSKSSAELHADMTVNSVSKDNLAASDQTSLKDTLAAIRNVTQAAARIQSAFRSHSFRKRRAREAAASTGGIGSISEISAMSKLAFRNSREDNSAALSIQKKYRGWKGRKDFLALRQKVVKIQAHVRGYQVRKHYKVLWAVGILDKVVLRWRRKGAGLRGFRQEMDSNENEDEDEDILKVFRKQKVDVEIEEAVSRVLSMVDSPDAREQYHRMLEKYRQAKAELAGTSDEASLSTSVGDALFMEDDFYPFH 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01788 978 Pfam IQ calmodulin-binding motif 844 863 IPR000048 GO:0005515
Cca09g01788 978 Pfam IQ calmodulin-binding motif 821 839 IPR000048 GO:0005515
Cca09g01788 978 Pfam CG-1 domain 15 128 IPR005559 GO:0003677
Cca09g01788 978 Pfam IPT/TIG domain 422 505 IPR002909 -
Cca09g01788 978 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 973 - -
Cca09g01788 978 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 808 866 IPR027417 -
Cca09g01788 978 MobiDBLite consensus disorder prediction 140 186 - -
Cca09g01788 978 PANTHER CALMODULIN-BINDING PROTEIN 1 973 - -
Cca09g01788 978 SMART ANK_2a 651 680 IPR002110 GO:0005515
Cca09g01788 978 SMART ANK_2a 690 719 IPR002110 GO:0005515
Cca09g01788 978 MobiDBLite consensus disorder prediction 192 211 - -
Cca09g01788 978 SMART iq_5 767 789 IPR000048 GO:0005515
Cca09g01788 978 SMART iq_5 818 840 IPR000048 GO:0005515
Cca09g01788 978 SMART iq_5 841 863 IPR000048 GO:0005515
Cca09g01788 978 CDD IPT 422 506 - -
Cca09g01788 978 SUPERFAMILY Ankyrin repeat 620 713 IPR036770 -
Cca09g01788 978 Gene3D - 819 867 - -
Cca09g01788 978 SMART CG_1_2 12 130 IPR005559 GO:0003677
Cca09g01788 978 ProSiteProfiles CG-1 DNA-binding domain profile. 9 135 IPR005559 GO:0003677
Cca09g01788 978 Gene3D Immunoglobulins 416 511 IPR013783 -
Cca09g01788 978 Pfam Ankyrin repeats (3 copies) 625 711 IPR002110 GO:0005515
Cca09g01788 978 ProSiteProfiles IQ motif profile. 769 797 IPR000048 GO:0005515
Cca09g01788 978 MobiDBLite consensus disorder prediction 135 186 - -
Cca09g01788 978 ProSiteProfiles Ankyrin repeat profile. 651 683 IPR002110 GO:0005515
Cca09g01788 978 Gene3D - 539 716 IPR036770 -
Cca09g01788 978 ProSiteProfiles IQ motif profile. 842 867 IPR000048 GO:0005515
Cca09g01788 978 Coils Coil 937 957 - -
Cca09g01788 978 ProSiteProfiles Ankyrin repeat region circular profile. 651 677 - -
Cca09g01788 978 ProSiteProfiles IQ motif profile. 819 848 IPR000048 GO:0005515
Cca09g01788 978 SUPERFAMILY E set domains 422 506 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01788 Cca-Chr9 42497006 42506012 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01788 6 969 CAMTA Transcription Factor Family AT1G67310 52.871 0.0 919
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Cca09g01788 CG-1 8.9e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01788 K21596 - gmx:100786880 1677.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00075 01 763929 773192 Cca09g01788 09 42497006 42506012 PCT