Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01781 ATGCGGTGGAACGCAAAATCTCCCCCACAGTGGGAGTGGGATCACCTATTCTTCAATACAAATCCAACAGAAAATTCAAAGTTACAATCACCAAACTGGACTGGTGAAGCAAACCAAGAAATCAGTTTTGAGTTGTTTGATGCATCTGGTAGCAATGGTTGTTCTGGGTCAGAGCTAATACACGCTTCTTCATCAAGGACCACAAAATCAGCCTCTATCAATTCATCATCAAATATGGGTAGCAAAACATCTATATTCACTTTTGAAAGTTCCCAAGATGATTCCAGTGGTAAACAAGAATTATCTAAAGAAGAGCTAGTAGAAACTTCTCATGCACCAGAGCCATCTTCTGTCTCTGGTGAACCATTGCTCACTCTAAAGCTTGGTAAGCGGTTGTACTTTGAAGATGTTTGCCCAGGAAGTGATTCCAAGAACATATCTTTCTCCAAGGATTCCATGTCATCTTTAAGTTCCGGAAAGAAATGCAAGTCCAATGATCAGAGCATACAATATCCATGTTGTCAGGTTGAAGGATGTGGTCTTGACCTTTCATCAGCTAAAAATTACCACCGCAAGCACAGAGTTTGTGAAAGTCATTCCAAATCCCCTAAAGTGGTTGTAGCTGGTTTGGAACTTCGATTTTGCCAGCAATGTAGTAGGTTCCATGGTCTGTTAGAGTTTGATGAAAAAAAGAGAAGTTGCCGACGACGTCTTTCAGATCATAATGCAAGGCGCCGTAAACCTCTTCCTGAAGTTGTCCAATCAAGTCAATCAGCTTTGTCTTCGGTGCCATGTGGTGTAACTTCTTAA 810 0.4123 MRWNAKSPPQWEWDHLFFNTNPTENSKLQSPNWTGEANQEISFELFDASGSNGCSGSELIHASSSRTTKSASINSSSNMGSKTSIFTFESSQDDSSGKQELSKEELVETSHAPEPSSVSGEPLLTLKLGKRLYFEDVCPGSDSKNISFSKDSMSSLSSGKKCKSNDQSIQYPCCQVEGCGLDLSSAKNYHRKHRVCESHSKSPKVVVAGLELRFCQQCSRFHGLLEFDEKKRSCRRRLSDHNARRRKPLPEVVQSSQSALSSVPCGVTS 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01781 269 Pfam SBP domain 174 247 IPR004333 GO:0003677
Cca09g01781 269 ProSiteProfiles Zinc finger SBP-type profile. 171 248 IPR004333 GO:0003677
Cca09g01781 269 Gene3D - 164 235 IPR036893 GO:0003677|GO:0005634
Cca09g01781 269 MobiDBLite consensus disorder prediction 96 110 - -
Cca09g01781 269 MobiDBLite consensus disorder prediction 251 269 - -
Cca09g01781 269 MobiDBLite consensus disorder prediction 238 269 - -
Cca09g01781 269 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 20 263 IPR044817 GO:0003677
Cca09g01781 269 SUPERFAMILY SBT domain 172 253 IPR036893 GO:0003677|GO:0005634
Cca09g01781 269 MobiDBLite consensus disorder prediction 51 95 - -
Cca09g01781 269 MobiDBLite consensus disorder prediction 51 121 - -
Cca09g01781 269 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 20 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01781 Cca-Chr9 42420253 42424488 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01781 1 250 SBP-box Gene Family AT5G43270 50.787 9.96e-57 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Cca09g01781 SBP 7.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01781 - - lja:Lj0g3v0057709.3 384.415