Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01762 ATGGATGTTGCTGAGGTTGAAGAGAATCTATTTGCCGTAAGTGATGCCAAGTTACATGGACAAATGTGCAAGACCCTTTCTATAATATACTGCAAAGTATTGTCTGTATTTCCTTCTTTAGAAGCTGCTAGGCCTAGGAGTAAATCTGGTATTCAGGCATTATGTTCATTGCATGTAGCCTTAGAGAAAGTCAAGAATATTCTTCAGCACTGCTCAGAGTGTAGTAAACTTTACTTGGCTATAACTGGAGATTCTGTCCTTCTAAAATTTGAGAAGGCTAAATGTGCTCTTGAAGATAGTCTTAGACGGGTGGAAGATATTGTTCCACAATCTATAGGTTGTCAGGTTCAGGAGATTGTGAATGAATTTGCGACTATAGAATTTGCACTTGACCCATCAGAAAAGCAAGTTGGTGATGATTTAATAGCATTGCTCCAACAGGGAAGAAAGTTTAGTGACTCTAGTGACAGCAATGAGCTTGAATCTTTTCACCAGGCTGCTACAAGACTTGGAATCACATCTTCAAGAGCAGCTCTTACTGAAAGAAGAGCTCTCAAGAAACTCATAGAAAGGGCTAGAACTGAGGAAGACAAGCGGAAGGAATCAATTGTTGCATATCTTTTACATCTTATGAGGAAATACTCCAAGTTATTTAGAAGTGAGTTCTCGGATGACAATGATTCTCAGGGTTCTTCACCTTGTTCTCCCACTGTTCAGGGATCTATTGAGGATAGTGTTCCTGGTAGTCACTCACAAGCCTTTGACAGACAGATTTCAAAACTCAGTTGTTTTAATTTCAAACCAAATAATAGTAGCAAGTCAGGGCTGATGCCTCTTCCACCTGAAGAGTTAAGGTGTCCAATATCTCTGCAACTTATGTATGATCCTGTTATCATTGCTTCTGGGCAAACATATGAAAGGGTTTGTATAGAGAAATGGTTCAGTGATGGGCACAACAACTGCCCAAAGACCCAACAGAGACTTTCACATCTTTGTTTGACTCCTAATTACTGTGTTAAGGGCCTTGTTGCTAGTTGGTGTGAACAAAATGGAGTTCCTATTCCTGAAGGCCCTCCTGAATCCCTTGATCTTAACTACTGGGGGTTGGTATTATCAGAGTCTGAATCTACAAATTCAAAATCTGTAAATAGTGTCAGCTCTTGCAAGTTGAAGGGTGTCCAAGTGGTTCCTTTGGAAGAGAGTGGTATCTCAGAGGAATCTGTGGAAAATGGAACTGAAAGTGTGTCTGTACAAGGGGAAGACACTGAGCAGTATTTTAGTTTTCTGAAAGTCCTGACTGAGGAGAACAATTGGAGGAGGCAATGTGAAGTGGTAGAACAGTTAAGGCTGTTGCTGAGGGATGATGAGGAAGCTAGGATTTTTATGGGGGCTAATGGGTTTGTTGAAGCACTTTTGCAGTTTTTGCATTCAGCTGTGCGTGAAGGTAGTTTGATGGCTCTGGAAAGTGGAGCAATGGCTCTCTTCAACTTGGCTGTGAATAATAACAGAAATAAGGAAATTATGTTATCAGCTGGAGTATTATCGTTATTGGAGGAAATGATTTCAAAAACTAGTTCTTATGGTTGTACAACTGCTCTTTATTTGAATCTCTCTTGCCTTGAAGAAGCCAAGCCTATGATTGGCATGAGTCAGGCTGTCCAGTTCCTTATCCAACTTCTTCAATCTGACGCTGATGTTCAATGCAAGCAAGATTCTCTCCATGCTCTCTATAATCTTTCTACTGTGCCTTCCAATATTCCGTACCTCCTTTCATCTGGCATCACTAGTGGTTTACAATCCCTTCTTGTAGGCGAGGGTGATTGCATGTGGATAGAAAAAAGCATAGCTGTTTTGATAAATTTAGCTACTTCAGAAGTTGGTAGGGAGGAAATTTTATCTACACCTGGACTCATTAGTGCATTGGCTTCGATATTGGACACTGGTGAGCTCTTAGAACAGGAGCAAGCTGTGTGTTGCCTCCTAATTTTGTGCAATAGAAGTGAGACTTGTAGTGAGATGGTACTGCAAGAAGGGGTTATACCAGCATTGGTTTCAATATCAGTGAACGGGACCCCAAGAGGAAGAGAAAAAGCTCAGAAACTCTTGATGCTGTTCCGAGAGCAGCGAAGGGACCAATCACCAATTAAGACACATGAGAGCCCACCTGAAACCAGTGATTTTGATTTGTCTATGCCGCCGGCTGAAATGCAACCGCTATGCAAGTCGATTTCAAGAAGAAAGTCTGGGAAGACTTTCAACTTTTTCTGGAAAAGCAAGAGCTATTCTGTTTACCAGTGTTAA 2301 0.4116 MDVAEVEENLFAVSDAKLHGQMCKTLSIIYCKVLSVFPSLEAARPRSKSGIQALCSLHVALEKVKNILQHCSECSKLYLAITGDSVLLKFEKAKCALEDSLRRVEDIVPQSIGCQVQEIVNEFATIEFALDPSEKQVGDDLIALLQQGRKFSDSSDSNELESFHQAATRLGITSSRAALTERRALKKLIERARTEEDKRKESIVAYLLHLMRKYSKLFRSEFSDDNDSQGSSPCSPTVQGSIEDSVPGSHSQAFDRQISKLSCFNFKPNNSSKSGLMPLPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDGHNNCPKTQQRLSHLCLTPNYCVKGLVASWCEQNGVPIPEGPPESLDLNYWGLVLSESESTNSKSVNSVSSCKLKGVQVVPLEESGISEESVENGTESVSVQGEDTEQYFSFLKVLTEENNWRRQCEVVEQLRLLLRDDEEARIFMGANGFVEALLQFLHSAVREGSLMALESGAMALFNLAVNNNRNKEIMLSAGVLSLLEEMISKTSSYGCTTALYLNLSCLEEAKPMIGMSQAVQFLIQLLQSDADVQCKQDSLHALYNLSTVPSNIPYLLSSGITSGLQSLLVGEGDCMWIEKSIAVLINLATSEVGREEILSTPGLISALASILDTGELLEQEQAVCCLLILCNRSETCSEMVLQEGVIPALVSISVNGTPRGREKAQKLLMLFREQRRDQSPIKTHESPPETSDFDLSMPPAEMQPLCKSISRRKSGKTFNFFWKSKSYSVYQC 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01762 766 PANTHER U BOX DOMAIN-CONTAINING 1 747 - -
Cca09g01762 766 SMART arm_5 455 499 IPR000225 GO:0005515
Cca09g01762 766 SMART arm_5 540 581 IPR000225 GO:0005515
Cca09g01762 766 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Cca09g01762 766 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 353 IPR013083 -
Cca09g01762 766 MobiDBLite consensus disorder prediction 222 250 - -
Cca09g01762 766 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Cca09g01762 766 SUPERFAMILY ARM repeat 428 707 IPR016024 -
Cca09g01762 766 CDD RING-Ubox_PUB 284 326 IPR045210 -
Cca09g01762 766 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 466 512 IPR000225 GO:0005515
Cca09g01762 766 SUPERFAMILY RING/U-box 274 355 - -
Cca09g01762 766 MobiDBLite consensus disorder prediction 224 250 - -
Cca09g01762 766 Gene3D - 609 719 IPR011989 -
Cca09g01762 766 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Cca09g01762 766 Coils Coil 764 766 - -
Cca09g01762 766 MobiDBLite consensus disorder prediction 710 731 - -
Cca09g01762 766 Gene3D - 427 607 IPR011989 -
Cca09g01762 766 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 747 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01762 Cca-Chr9 42161782 42165674 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01762 1 765 U-box Gene Family AT1G24330 67.095 0.0 1044
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01762 - - gmx:100794099 1371.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00100 01 994308 998186 Cca09g01762 09 42161782 42165674 PCT