Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01754 ATGGAGTCCGATTCAGATTCCGACGGATCTCACGTCTCCGCAACTccaccaagacattcaactccatctccaccaccaccaccgccacgacaaccaccTCTCGTCGTTTCAAACAAATCCAGAGTCAGAATCAAACCCTCAAAATCAAAAGCAGTCCCTTCCGAACCCTCCAAATCCTCATCAAAACCCGAACCGGCCCAACAACCCCCACTCTCCATCCTCACCGATCTCCCCTTCCAAATTCGGCGTCGTTCCGATTGCGTTCCCGCAATTTCCCCCTCCATCGAAACCATCCCCGCCGGTTACTTCGCCTCTCACTCCGCTTCCTTCACGAAGATTCGAAGGCCCCTCGTTCTAGAATCTTCCGCAACCTCTCCTCTCCCCACTCCCCCCGCGTCCGATTCACGCGCTGCGGTTGAGATTGCTGAAACCAGGAAGCGGGGAAAGATGCAGCATCCCAACCTCATCGGCGCCAGCGCGCCAATGCCGTGTCCGAAGTTTCGCACATGCGGCGGTAGCGGCGGCGGAGGGGAAGGGAACTTCGTGAAGCTGAACTTGAGCGGCAGGAGGAGGAAGTTCGTGAACAAGAGAGGGAAATTTGGCGGGAAAAAGTACTACAAGAGAGGGAAATTCAAATCGGAGCGTGTGAAAGAGGAACAAGAGGAGGGGGTTGGGGATTTGAAGCAGAGAGGGGGTTGCAAGAGGAGGGAGATTGATTGCGATGCGGTGGAAGCGGTGGCGGCCGCTGCCCGTGAAGAGGCTTCGGAGGAGAACTTGGTGAAGTTGTTGAAATTGGTTTATGGTTTTGATTGTTTCAGAGAAGGGCAGGTTGAGGCGATTAAGATGGTTCTGGATGGAAAGTCGAGTGTGGTTGTTTTGCCGACTGGTGCAGGGAAGTCGCTGTGTTATCAGTTGCCTGCTGTGATTTTGCCTGGGGTTACATTGGTTGTTAGTCCATTGGTGGCTTTGATGATTGATCAGCTAAGGCAATTGCCTCATGTGATTAGGGGTGGTCTTCTATCCAGCACTCAGACACCTGAAGAAGCCTCTGAAACATTCAAGCAACTTCGACAAGGGGAGATAAAGGTGCTTTTTGTTTCACCGGAGCGGTTTCTGAATGAAGAGTTTTTGTCTACTATTTCTTCTTTGCCAGCCATCTCACTTGTTGTTATTGATGAAGCACATTGTATATCTGAATGGTCTCACAATTTCCGACCTTCGTTTATGAGGCTTAGAGCATCGCTACTTCAGAAGACACTTAATGTTCGTTCTGTTCTTGCAATGACAGCAACTGCTACAACCACAACTTTAGATGCCATCATGTCTGCTCTAGATATTCCTTGCACAAATCTCATTCAGAAGGCGCAGTTAAGGGACAATTTTCATTTATCAGTGTCTTTGGTCAGAAATAGAACGAAAGACCTGCTGATTTTGATAAAGTCTCCTCCTTTTGTGGAAGTTCAAAGCATCATCATATACTGCAAATTTCAGTATGAAACTGATCAAATTAGCAGATATTTGAATGATAACAATATCTTGGCAAAGAGTTACCATAGTGGTATCACTGCGAAGGAACGTAGCTATGTACAGGATTTGTTTAATTCCAACAAGATCAGAGTGGTCGTCGCAACTGTGGCATTTGGCATGGGACTAGATAAAAGGGATGTTGGAGCTGTAATTCATTACAGTTTGCCTGAAAGTCTGGAAGAGTATGTGCAGGAGATAGGACGTGCTGGAAGGGATGGGAGGTTGTCCTACTGTCACCTATTTTATGATGATGAGACTTATTTCAAACTTCGTAGTTTAATGTACAGTGAAGGAGTAGATGAATATGCAGTGAACAAATTTCTGCGTGAAGTGTTTCCTACTGACAAAAACTCCTGTGGGAAAATCTGTTCATTAATCAAAGAATCTGCTTCACGCAGGTTTGATATGAAAGAAGAGGTGATGCTTACACTTTTGACACGCTTGGAGTTGGGTGATGTGCAGTACTTGCAGTTACTTCCACAGATAAATGTAACTTGCACTTTGGCTTTTCACAAGACACCTCCGCTGTTACTTGCCCAGAAGGTTTCTGCTATGGCTGTAATTCTGAAAAGATCTGAAAAAAGGCAGGGGCAATATATTTTTGACATTCCAACTGTGGCAAATGACATGGGGGTTACAGCAGTTGAATTAACGAATCAGTTGTACGACCTGAAGTTGATGGGAGAAATAACTTATGAAATGAAGGACTTGGCCTACTGTTATAGGATCATTGAAGTCCCAGCAGACTTGTTATCTCTATCAGCAGACATAACCCGATGGTTATCGGATGTTGAAAATTGTAAGGTAGGAAAAATGGATGCAATGTTTAATGCTGCATATTTTGCATTAAATCTATGTGATAAGATGCAAGGTTGCAGTGGTGCCGATCACACACCATGCTTGCAACGGAAAATATTGGATTACTTTTCTGGAGTTGATAATGCTGATATCTGCAAGAAAATTGGTCAAAGCAGCCCTTTCCTGCGGGCAGATATAAAGGTGTTTCTGCAAAGCAATTCACAGGCTCGATTTACACCAAGAGCAGTTGCGAGAATAATGCATGGAATTGCAAGCCCAGCCTATCCGTCAACAGCATGGAGTAAAACTCATTTCTGGGGAAGGTATACGAAAATAGACTTTAAGGTAGTGATGGAAGCAGCGAAGGCGGAACTTCAGAATTTTGTTGGAAAAGATACGCTCTAA 2730 0.4432 MESDSDSDGSHVSATPPRHSTPSPPPPPPRQPPLVVSNKSRVRIKPSKSKAVPSEPSKSSSKPEPAQQPPLSILTDLPFQIRRRSDCVPAISPSIETIPAGYFASHSASFTKIRRPLVLESSATSPLPTPPASDSRAAVEIAETRKRGKMQHPNLIGASAPMPCPKFRTCGGSGGGGEGNFVKLNLSGRRRKFVNKRGKFGGKKYYKRGKFKSERVKEEQEEGVGDLKQRGGCKRREIDCDAVEAVAAAAREEASEENLVKLLKLVYGFDCFREGQVEAIKMVLDGKSSVVVLPTGAGKSLCYQLPAVILPGVTLVVSPLVALMIDQLRQLPHVIRGGLLSSTQTPEEASETFKQLRQGEIKVLFVSPERFLNEEFLSTISSLPAISLVVIDEAHCISEWSHNFRPSFMRLRASLLQKTLNVRSVLAMTATATTTTLDAIMSALDIPCTNLIQKAQLRDNFHLSVSLVRNRTKDLLILIKSPPFVEVQSIIIYCKFQYETDQISRYLNDNNILAKSYHSGITAKERSYVQDLFNSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFYDDETYFKLRSLMYSEGVDEYAVNKFLREVFPTDKNSCGKICSLIKESASRRFDMKEEVMLTLLTRLELGDVQYLQLLPQINVTCTLAFHKTPPLLLAQKVSAMAVILKRSEKRQGQYIFDIPTVANDMGVTAVELTNQLYDLKLMGEITYEMKDLAYCYRIIEVPADLLSLSADITRWLSDVENCKVGKMDAMFNAAYFALNLCDKMQGCSGADHTPCLQRKILDYFSGVDNADICKKIGQSSPFLRADIKVFLQSNSQARFTPRAVARIMHGIASPAYPSTAWSKTHFWGRYTKIDFKVVMEAAKAELQNFVGKDTL 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01754 909 SMART ultradead3 268 464 IPR014001 -
Cca09g01754 909 MobiDBLite consensus disorder prediction 52 68 - -
Cca09g01754 909 Gene3D - 241 449 IPR027417 -
Cca09g01754 909 Pfam DEAD/DEAH box helicase 275 436 IPR011545 GO:0003676|GO:0005524
Cca09g01754 909 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 280 450 IPR014001 -
Cca09g01754 909 CDD SF2_C_RecQ 458 591 - -
Cca09g01754 909 MobiDBLite consensus disorder prediction 1 78 - -
Cca09g01754 909 MobiDBLite consensus disorder prediction 18 34 - -
Cca09g01754 909 CDD DEXHc_RecQ4-like 260 453 - -
Cca09g01754 909 PANTHER ATP-DEPENDENT DNA HELICASE Q4 48 833 - -
Cca09g01754 909 Pfam Helicase conserved C-terminal domain 488 581 IPR001650 -
Cca09g01754 909 Gene3D - 457 649 IPR027417 -
Cca09g01754 909 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 262 610 IPR004589 GO:0004386|GO:0006310
Cca09g01754 909 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 312 600 IPR027417 -
Cca09g01754 909 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 387 396 IPR002464 -
Cca09g01754 909 PANTHER DNA HELICASE RECQ FAMILY MEMBER 48 833 - -
Cca09g01754 909 SMART helicmild6 501 582 IPR001650 -
Cca09g01754 909 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 471 621 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01754 Cca-Chr9 42063639 42073281 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01754 491 614 Eukaryotic Initiation Factors Gene Family AT3G19760 31.746 8.54e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01754 K10730 - gmx:100811214 1417.91