Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01742 ATGGACAATGGTTGCTTCTCTTCTCCACGCCACGATGCCTTTCCAGCTGGTCTGCGAGTTCTCGTTGTTGATGATGATCCAACATGGTTGAGGATCCTTGAAAAGATGCTCAAGAAGTGCTTGTATGAAGTGACAACATGTTGTTTAGCAATAGAGGCTCTAAAGAAACTTCGTGAAAGGAAAGATGCATATGACATAGTGATCAGCGATGTGAACATGCCTGACATGGATGGTTTCAAACTTCTTGAGCAAGTTGGACTCGAGATGGATCTTCCTGTCATTATGATGTCTGTTGATGGAGAAACAAGCAGGGTGATGAAAGGAGTCCAACATGGAGCATGTGATTATCTCCTTAAGCCTATAAGGATGAAAGAATTGCGAAACATTTGGCAACACGTCTTCAGAAAAAGGATGCACGAGGCAAGAGATTTTGAAAGTCTTGAGGGTTTTGAGGGCATTCACTTAATGAGAAATGGACCAGATCATGATGAGGGTAACCTGTTTGCTGTAGAAGAAATTACCTCAATGAAGAAAAGGAAAGATGCAGATAACAAGCATGATGACAAAGAATTTGGAGATCATTCCCCCACAAAGAAGGCTAGAGTAGTTTGGTCTGTGGATCTTCATCAGAAGTTTGTCAAAGCAGTCAATCAAATTGGATTTGATAAAGTTGGTCCCAAGAAAATTCTAGATTTGATGAATGTTCCATGGCTGACTAGAGAAAATGTTGCCAGCCACTTGCAGAAATACAGGCTCTACTTAAGTAGGTTGCAAAAGGAAAATGATCAGAAATCTTCCTCAAGCGGAATAAAGCATTCAGATTCACCTTTAAAAGATCCAGGGAGTTTTAGTTTTCTAAACATTGCAAACAAGCAAGAAAATGATGTTGCCATTGACAACTTAAGTTATTCAGATGGAAGTTTACTACTTCAGATGGATACTACAAGTCATGAAGGTGATCTCAAGGGAATTGTGTCAGAGCCTACAACAGAAAAAAGAAGAGCTTCCACTAGTGACATTCCTGACCCAAAGATACAAAAAGCTTCACAGATGAGCCTTAATCAACCTTTTGCACCTGTAGAATCATCAGAAGCAAACCATGCAGTCTTTGATTGCACCCTACCAACACAGTACTCTTGGAGTGAGTTTCCAAAAGGGGCACTCAAAGAAGAACAGAAGACACTTGTTCAAATAGAAGATAGCTTCAGCCAGTTACCATTACATGGCACACAACATCACATTCAGGTTGATCAATCACAATCAATTGCCTCAATTAATTCCAATCCCCCTATAACAGATGAAGAGGTTGTTGCCAGCTTAGAAACCAAACCTTTGTATATCGGTTACAAGAATGATTATGTTAGTCCTGTGAGTTCAAAAGGATCTGCAGTTGAAGCCTTTCCTAGTCAGTCCAAAAACCTTGTGGTGAATGATCATTCTTCAGAGCCCATTTTCACCTCAAATATGGGCTTGAAGACTCGGGGGTTCAATCTAGATTGCATTTCTGATCTAGATTTTTACCGAAGGAACCTATTATTGAGTGGTGAGGCAGCTTTTGCACCTTTGGAGGAGGACTTGAATTTCTTTTTGCTACATGGTGAATGCTACAATATGAATTTTGGCCTGCAGAATATAGATATGTCGGAGTATTATGATCCAAGGCTTATTGCTGAAGTCCCTAGCCACTTTTATGATTCAGCAGATTATTCATCGCTAGATCAAAGTCTATTCATAGCATGA 1740 0.4006 MDNGCFSSPRHDAFPAGLRVLVVDDDPTWLRILEKMLKKCLYEVTTCCLAIEALKKLRERKDAYDIVISDVNMPDMDGFKLLEQVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRMHEARDFESLEGFEGIHLMRNGPDHDEGNLFAVEEITSMKKRKDADNKHDDKEFGDHSPTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDQKSSSSGIKHSDSPLKDPGSFSFLNIANKQENDVAIDNLSYSDGSLLLQMDTTSHEGDLKGIVSEPTTEKRRASTSDIPDPKIQKASQMSLNQPFAPVESSEANHAVFDCTLPTQYSWSEFPKGALKEEQKTLVQIEDSFSQLPLHGTQHHIQVDQSQSIASINSNPPITDEEVVASLETKPLYIGYKNDYVSPVSSKGSAVEAFPSQSKNLVVNDHSSEPIFTSNMGLKTRGFNLDCISDLDFYRRNLLLSGEAAFAPLEEDLNFFLLHGECYNMNFGLQNIDMSEYYDPRLIAEVPSHFYDSADYSSLDQSLFIA 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01742 579 SUPERFAMILY CheY-like 17 144 IPR011006 -
Cca09g01742 579 Gene3D - 18 186 - -
Cca09g01742 579 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 199 252 IPR006447 GO:0003677
Cca09g01742 579 SMART REC_2 18 130 IPR001789 GO:0000160
Cca09g01742 579 Pfam Myb-like DNA-binding domain 201 251 IPR001005 -
Cca09g01742 579 CDD REC_typeB_ARR-like 20 134 - -
Cca09g01742 579 SUPERFAMILY Homeodomain-like 197 256 IPR009057 -
Cca09g01742 579 MobiDBLite consensus disorder prediction 319 343 - -
Cca09g01742 579 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Cca09g01742 579 Gene3D - 196 258 - -
Cca09g01742 579 PANTHER TWO-COMPONENT RESPONSE REGULATOR 6 554 IPR045279 GO:0009736
Cca09g01742 579 MobiDBLite consensus disorder prediction 324 340 - -
Cca09g01742 579 PANTHER TWO-COMPONENT RESPONSE REGULATOR 6 554 - -
Cca09g01742 579 Pfam Response regulator receiver domain 20 129 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01742 Cca-Chr9 41941711 41946472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01742 12 265 Response Regulator Gene Family AT2G25180 54.753 1.40e-81 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Cca09g01742 Response_reg 6.6e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01742 - K14491 gmx:100778324 1049.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00131 01 1280142 1284591 Cca09g01742 09 41941711 41946472 PCT