Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01736 ATGAAACTTTCTTCAGCTGGTTTTAGTCCTCCACCCCAGGAAGGAGAAAAGCGAGTTTTAGATTCAGAACTTTGGCATGCTTGTGCTGGTCCTCTTGTTTCTTTACCAGCTGTTGGAAGCCGCGTGGTCTACTTTCCACAAGGTCACAGTGAACAGGTTGCTGTGTCTACCAACAGGGAAGTGGATGGCCATATACCCAACTATCCAAGCTTACCGCCTCAGCTTATTTGTCAACTTCATAATGTGACTATGCATGCAGATACCGAGACTGATGAAGTATATGCTCAGATGACCTTGCAACCTCTGAGTCCTGAAGAGCAAAAGGAGGCATACCTTCCAGCAGATTTAGGCACTCCAAGTAAACAGCCAACGAACTACTTTTGCAAAATCTTGACAGCCAGTGACACTAGCACTCATGGGGGATTCTCTGTTCCTCGCAGGGCAGCTGAAAAAGTTTTTCCTCCATTGGACTTTTCACAACAGCCTCCTGCTCAAGAGTTAGTTGCAAGGGATTTGCATGGTAATGAGTGGAAATTCAGACATATCTTCCGTGGCCAGCCCAAAAGGCATCTACTTACAACGGGATGGAGTGTCTTTGTGAGTGCTAAAAGACTTGTTGCTGGGGATTCAGTGCTGTTTATCTGGAATGATAAGAATCAATTGCTTCTTGGCATTCGGCGTGCTAATCGACCTCAACCTGTGATGCCTTCATCAGTTTTGTCAAGTGATAGCATGCATTTGGGGCTTCTTGCCGCTGCAGCTCATGCCGCTGCAACTAATAGTCGTTTCACCATCTTTTATAACCCACGTGCTAGCCCATCGGAATTTGTCATACCTTTAGCGAAGTATGTTAAGGCCGTGTATCATACTCGAGTTTCAGTCGGTATGCGCTTCAGAATGCTGTTTGAAACAGAGGAATCTAGTGTGCGTCGATACATGGGCACCATAACTGGCATTAGTGACTTGGATTCTGTCCGGTGGCCAAATTCACATTGGCGCTCAGTCAAGGTTGGCTGGGATGAATCCACGGCAGGAGAGAGGCAACCTCGAGTGTCTTTATGGGAAATTGAGCCATTGACAACATTTCCAATGTATCCATCTCCATTCCCCCTTAGGCTTAAGAGACCATGGCCTCCAGGATTGCCTTCATTCCATGCAGGTTTGAAGGATGATGATTTCGGTATGAATTCTTCACTAATGTGGCTTCGAGACGCAGATAGAGGGCTTCAGTCTCTTAACTTTCAGGGAATTGGTGTTAATCCTTGGATGCAGCCAAGGCTTGACCCTTCGATGGTTAATTATCAAACAGATATGTACCAAGCTATGGCTGCCGCTGCACTTCAGGATATGTGGACATCAGATCCTTCCAAACAGCATCCTCCATCCTTGATTCAATTTCAGCAACCGCAGAACTTCCCCAACAGGACTTCTCCCTTAATTCAGACTCAAATGTTGCAGCAGTCTCAACCTCAGCAGGCTTTTCCAAATAGTCAAGAAAATCCCCATCCATCTCAATcacctgctcaaactcaaacgcattttcagcagcatctacagcaacaacactcgttcaataatcagaatcagcatcatcttctgcagcagcaacagccgcaagtgcaacagcaacagcaacaagtgatggatcatcagcagatttcAAGCGCTGTCTCTACAATAGCTCAGTTCATTTCAGCGCCTCAATCTCAATCACCACCCATGCAAGCTATCTCTTCACTGGGTCATCAGCAAAACTTTTCTGATTCAAATGGGAACCCTGTGACAACAGCTATTGTTTCTCCCCTGCATAGTATATTGGGTTCATTTCCCCAGGATGAAACATCTCACCTTCTCAACCTTCCTAGAACTACGTCTTGGGTTCCTGTTCAACCTTCAACTGCGTGGCCTCCCGCCAAGCGTGTTGCAGTGGATCCTCTCCTTTCTTCAGGAGCATCTCAATGTGTTATGCCTCAAGTGGAGCAGTTAGGGCAGCCACAGAGTACCTTGTCACAAAATGCCATTAGTTTGCCACCCTTTCCTGGTAGGGAGTGTGCAATAGAAGGAAGCACTGATCCTCAAAATCATCTTTTGTTTGGTGTCAATATAGAGCCCTCGTCACTTCTACTGCATAATGGGATGTCAAGTCTTAAGGGGGTCAGCAGCAACAGTGACTCACCAACTATACCTTTTCAATCAACTAACTACCTCAACACCACAGGCACTGATTCTTCATTGAATCCTGGAATGACACAAAATATCGGTGAATCGGGCTTCCTGCAAACTCCAGAAAATGGGGGGCAAGGAAACCCACCGAACAAAACCTTTGTGAAGGTTTATAAGTCAGGGTCCTTCGGAAGATCATTGGACATCACAAAATTCACCAACTACCACGAGCTACGCGGTGAGCTTGCTCGTATGTTTGGCCTTGAAGGTGAGTTGGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCAAGAGAATGACGTTCTTCTCCTCGGTGATGGCCCCTGGCCGTAA 2526 0.4386 MKLSSAGFSPPPQEGEKRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTNREVDGHIPNYPSLPPQLICQLHNVTMHADTETDEVYAQMTLQPLSPEEQKEAYLPADLGTPSKQPTNYFCKILTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELVARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRANRPQPVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFHAGLKDDDFGMNSSLMWLRDADRGLQSLNFQGIGVNPWMQPRLDPSMVNYQTDMYQAMAAAALQDMWTSDPSKQHPPSLIQFQQPQNFPNRTSPLIQTQMLQQSQPQQAFPNSQENPHPSQSPAQTQTHFQQHLQQQHSFNNQNQHHLLQQQQPQVQQQQQQVMDHQQISSAVSTIAQFISAPQSQSPPMQAISSLGHQQNFSDSNGNPVTTAIVSPLHSILGSFPQDETSHLLNLPRTTSWVPVQPSTAWPPAKRVAVDPLLSSGASQCVMPQVEQLGQPQSTLSQNAISLPPFPGRECAIEGSTDPQNHLLFGVNIEPSSLLLHNGMSSLKGVSSNSDSPTIPFQSTNYLNTTGTDSSLNPGMTQNIGESGFLQTPENGGQGNPPNKTFVKVYKSGSFGRSLDITKFTNYHELRGELARMFGLEGELEDPVRSGWQLVFVDQENDVLLLGDGPWP 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01736 841 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Cca09g01736 841 SMART B3_2 127 229 IPR003340 GO:0003677
Cca09g01736 841 Gene3D - 291 363 - -
Cca09g01736 841 Gene3D - 125 228 IPR015300 -
Cca09g01736 841 PANTHER AUXIN RESPONSE FACTOR 1 841 - -
Cca09g01736 841 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Cca09g01736 841 Gene3D - 770 841 - -
Cca09g01736 841 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cca09g01736 841 ProSiteProfiles PB1 domain profile. 773 841 IPR000270 GO:0005515
Cca09g01736 841 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Cca09g01736 841 MobiDBLite consensus disorder prediction 452 522 - -
Cca09g01736 841 CDD B3_DNA 126 227 IPR003340 GO:0003677
Cca09g01736 841 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 841 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01736 Cca-Chr9 41844347 41852309 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01736 1 484 B3 DNA Binding Superfamily AT1G30330 85.481 0.0 830
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Cca09g01736 B3 2e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01736 - - gmx:100777789 1507.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01736 09 41844347 41852309 Cca09g01736 09 41844347 41852309 ECH
Cca01g00187 01 1857336 1863854 Cca09g01736 09 41844347 41852309 PCT