Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01699 ATGGTTCGTGGAAGAATAGCTATGAAGCTGATTGAAAAAGAGAAATCCCGTAAGACAACATTTCACAAGAGAAAGAACGGATTAATGAAGAAAGCTTATGAGTTTGCCACTCTTTGTGGGGTTGATGTTGGGGTAATTATCTATGCCCCCGACTTTCTTAAAGAACTTGAAACATGGCCCCAAGACTCAGAAGAGATAAAACGTGTCATTCAAAAACTTCAGAACACCACTAGAGATAGGTGTCCTAAGGTGTATGATGTGGAAGAGTATTTTAGCGAAAGGATGAAGAAGATTGAAGGTGAGATTTCCAAAGTGCACAAAGCGAAGATCAAGGTCATGTATCCAACTTGGGACGACTCATACAATACTCTTGGGGAGGAACAATTGAGGAGGTTTGTTGGTATTCTGGATGCTAAGCTTGATGCTTGTAATCGAAGGATGAACATGTTAAAACGAGATTCAAAGGGGAAAGCAAAAGCAGAATCAGACACAGCTGAGATACTTACTCCCTACATGGCCTCAAATTTAGGCAGTCACATGAATTTCATGCAGAACATGTCTCAAGCACAAATTTTCTATCCTATGAAGTCAACTAGTGATAACAACCAAGTAGCATTATACCCATTTCAGCTTGGCCAAAGTTCTAAATCTTCTATGTTTCATTTTGGTCCAAATTGCACACAATTAATGGGAAAAAATGGAATGGTGGATTGGGCTAATCAAGTTGGTGTTGTGGCTTGTGATCCCAAAAAGGGTATACTAGAGGAGGATGTATCTCAGAAAAGCCATAATTCCTCACCATGCTATTCCAATGGAAATATACAAACAATGCAGCCATATAATGTTAGTTTGCAAACTCTTCCTTCTCAATTGCAGTACAATGCAACTTTCCAGACTTTACCACGTCAACCAGGACCACCACCAGGGTCTCAACTTAATGACTCCTATGATTCAAATATGCTTCAACGTCAATATTTTTACTACATGCATGGAGGTCCCAGTACTTAA 1008 0.3948 MVRGRIAMKLIEKEKSRKTTFHKRKNGLMKKAYEFATLCGVDVGVIIYAPDFLKELETWPQDSEEIKRVIQKLQNTTRDRCPKVYDVEEYFSERMKKIEGEISKVHKAKIKVMYPTWDDSYNTLGEEQLRRFVGILDAKLDACNRRMNMLKRDSKGKAKAESDTAEILTPYMASNLGSHMNFMQNMSQAQIFYPMKSTSDNNQVALYPFQLGQSSKSSMFHFGPNCTQLMGKNGMVDWANQVGVVACDPKKGILEEDVSQKSHNSSPCYSNGNIQTMQPYNVSLQTLPSQLQYNATFQTLPRQPGPPPGSQLNDSYDSNMLQRQYFYYMHGGPST 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01699 335 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
Cca09g01699 335 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Cca09g01699 335 SUPERFAMILY SRF-like 3 96 IPR036879 GO:0003677|GO:0046983
Cca09g01699 335 PANTHER MADS BOX PROTEIN 3 223 - -
Cca09g01699 335 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL82 3 223 - -
Cca09g01699 335 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Cca09g01699 335 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Cca09g01699 335 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cca09g01699 335 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cca09g01699 335 CDD MADS 3 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01699 Cca-Chr9 41245026 41246033 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01699 1 234 Type I MADS-box Gene Family AT5G55690 31.250 1.31e-24 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Cca09g01699 SRF-TF 1.5e-19 No_clan