Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01689 ATGATGACTCCAAACTTGAACTTGGAACCTGAAAACCATTCAGAAGGCAGCAGCCAAGTGGCTTCCAATGTATCCTTGCATGAAGCATCACATGATCTTACAAAGGGCAGCACCACCACTTCCTCTTGCCTTACAAAGGATGAACCTGATCCAGGTTCCATTACCCTTGACTTGACACTCAACTTCAATTCCAATGATTGTGAGTTGAAAGGTTCAAGTGATGCTAGCAGTGAAGTAGGAGCTGAAGCTCCTGCTTCAGCATCGGCAACTCCTAGAGTTTTCTCTTGTAACTACTGCAGGAGGAAGTTCTATAGCTCACAAGCCTTAGGGGGTCACCAAAATGCTCATAAAAGGGAGAGGACAATGGCTAAGCGGGCAATGAGAATGGGGATGTTCACTGAGAGGTATACAAGCTTGGCCTCTCTACCTCTTCATGGTTCACCTTTTAGGTCTCTTGGCCTTGAAGCTCATTCTGCAATGCACCGAAGACACGTGTCACCCTCGCTGAGGGCCCCTGATATGAGAGCTGCTGCAAAATTTGAGAAAAACCACTTTGGATCACTAGTTTTCATGGAAGATGATGATGTTGGATTCTTTTGGCCTGGAAGTTTCAGACAGGTGGACCAAGGTGGTAGTGTTAATGTAGCACATGCTCAAAGTTCAAATGCTAGTTTAGTTCCTATGGTGCCTCCTCCACCACAAGCTTCTGCATCTCCGGATCTCACATTGAAGCTTTAA 738 0.4593 MMTPNLNLEPENHSEGSSQVASNVSLHEASHDLTKGSTTTSSCLTKDEPDPGSITLDLTLNFNSNDCELKGSSDASSEVGAEAPASASATPRVFSCNYCRRKFYSSQALGGHQNAHKRERTMAKRAMRMGMFTERYTSLASLPLHGSPFRSLGLEAHSAMHRRHVSPSLRAPDMRAAAKFEKNHFGSLVFMEDDDVGFFWPGSFRQVDQGGSVNVAHAQSSNASLVPMVPPPPQASASPDLTLKL 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01689 245 PANTHER ZINC FINGER PROTEIN 3-RELATED 7 245 - -
Cca09g01689 245 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 121 IPR013087 -
Cca09g01689 245 PANTHER ZINC FINGER PROTEIN JAGGED 7 245 IPR045320 GO:0003700
Cca09g01689 245 SUPERFAMILY beta-beta-alpha zinc fingers 92 122 IPR036236 -
Cca09g01689 245 MobiDBLite consensus disorder prediction 223 245 - -
Cca09g01689 245 Gene3D Classic Zinc Finger 72 140 - -
Cca09g01689 245 MobiDBLite consensus disorder prediction 1 22 - -
Cca09g01689 245 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01689 Cca-Chr9 41052134 41057692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01689 88 245 C2H2 Transcription Factor Family AT1G66140 45.109 2.86e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca09g01689 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01689 - - gmx:100775305 454.521