Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01662 ATGTCATTGTCTGCTCCAACTTCCCTTTTGAAGGTGGAGGAAATAGAAGGAAGAGGGAGGGGAATGGTTGCATCACAACCTCTTAAAGCTGGTCAAATTGTCCTCAAAGACTCTCCCATTCTGCTGTATTCGGCATTGCCCTTGATCACAAAGTCTTTGTCTTCTTCCTCCTCTGCCTCGACTTCCTGCTTCTGTGATCACTGCTTCAGAACCTTGCCTCCATCTTTACAGGGAGGTTCTTCATCATCCACAATTCTGTGCCCCAATTGTTGCTACCATCGTTTCTGCAGCTCAAGCTGTCTTTCAAAAGCACTGAACTCCTCCCATTCTTCTTGGGTATGTCAAGCATTATCTCGTCTCAGAGCCAATTCTCTACTGCTTGAGCAGCCCCTTGAGTGCCAAGTCCAAGCTAATTTTCTCATTGCTGCCTACAATCTTGCCAATGTCTCCCCTTCAGACTTTCAAATTATGCTTACTCTTCAGGGTTCTCCTGATGATTCCACCATTGGGGCAGCTCAGTTCCTACACCCCCTTATTTCATCCCTCTGCTCACTTGCTCTCATTAGCCCCCAGAATGGATTTTCTTTAGAACACACTGCTGCGCTTCTTGCCAAGGACAAGCTCAATGCCTTTGGCATAATGCAGCCTTTCTCTGTTGATGATGACCGGAGGTCTGTCAGAGCCTATGGCATTTACCCCTATGCCTCCTTTTTTAACCATGATTGCCTTCCCAATGCATGCAGATTTGATTATGTTGACGCTAATCCACCTGATGATGGCCATAATACTGACTTTATTATTAGGATGATTCATGATGTTCCCCAAGGTAGAGAGATCTGTTTGAGTTATTTCCCTGTGAATGAAAACTATTCTAGTAGGCAGAAGAGATTGATTGAAGACTATGGCTTCACCTGTAATTGTGATCGATGTAATGTGGAATCAAATTGGTCTGATAATGAAAGTGTTGAAGATAATGCAGAGGATGAAGAGGAGGTTATGGATGAGGACCAATGTGAAACTATGGAAGCATCAGACACCGACAATCATCCCCATGAAGATAATAATGATTTCCCACATGCTTACTTCTTTTTAAAATACATGTGTGACAGGACAAATTGCTGGGGAACTTTAGCTCCTTTACCTCCGCAGGGTGATACTCCATCTGATGTCATGGAATGCAATGTCTGTGGCAAATTGAAGAGTGACGATACAATTGATATTGATGAAGGGCAAGATGGAGTTTCCATGGAGGACTAA 1257 0.4375 MSLSAPTSLLKVEEIEGRGRGMVASQPLKAGQIVLKDSPILLYSALPLITKSLSSSSSASTSCFCDHCFRTLPPSLQGGSSSSTILCPNCCYHRFCSSSCLSKALNSSHSSWVCQALSRLRANSLLLEQPLECQVQANFLIAAYNLANVSPSDFQIMLTLQGSPDDSTIGAAQFLHPLISSLCSLALISPQNGFSLEHTAALLAKDKLNAFGIMQPFSVDDDRRSVRAYGIYPYASFFNHDCLPNACRFDYVDANPPDDGHNTDFIIRMIHDVPQGREICLSYFPVNENYSSRQKRLIEDYGFTCNCDRCNVESNWSDNESVEDNAEDEEEVMDEDQCETMEASDTDNHPHEDNNDFPHAYFFLKYMCDRTNCWGTLAPLPPQGDTPSDVMECNVCGKLKSDDTIDIDEGQDGVSMED 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01662 418 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR2 2 412 IPR044238 -
Cca09g01662 418 SUPERFAMILY SET domain 10 311 IPR046341 -
Cca09g01662 418 Gene3D - 128 210 - -
Cca09g01662 418 Coils Coil 319 339 - -
Cca09g01662 418 SMART set_7 8 290 IPR001214 GO:0005515
Cca09g01662 418 Pfam SET domain 19 283 IPR001214 GO:0005515
Cca09g01662 418 CDD SET_SMYD 208 310 - -
Cca09g01662 418 Gene3D - 64 123 - -
Cca09g01662 418 Gene3D SET domain 21 310 IPR046341 -
Cca09g01662 418 ProSiteProfiles SET domain profile. 8 284 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01662 Cca-Chr9 40540904 40542160 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Cca09g01662 SET 3.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01662 - - gmx:100783406 718.383