Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01658 ATGGTTTTTCCAAAACCTCCTTCTGAATCTGATCTCTTTCTTCATTCCAACTTTGCTTCTCGTTATGCCACCGACTCTCTTCCTAGGTTCTGCATGCCCGAGGACTCCATGCCTAAGGAGGCTGCTTACCAGAACATTCACGATGAGTTGCAGCTTGATGCCATTCCAAAGCTTAACTTGGCTTCCTTTGTCACCACTTCCATGGAAGAAGAGTGCAACAAACTCATCATGGAATCCATCAACAAGAACTATGTCGACATGGACGAGTATCCAATCACCACTGACCTTCACAATCGGTGTGTGAACATGATAGCACGTTTGTTCCATGCTGAAATTGGAGAAAACGAGACTGCAATTGGAGCAGGAACTGTTGGTTCATCGGAGGCCATAATGCTGGCAGGGCTTGCATTCAAGAAGAAGTGGCAGAACAAACGCAAGGCAGAGGGAAAGCCTTATGATAAGCCCAATTTGGTCACTGGTTCCAATGTCCAGGTATGTTGGGAGAAGTTTGCAAGGTATTTTGAGGTGGAGTTAAGGGAAGTGGAGGTGAGGGAAGGGTACTATGTGATGGACCCTGCCAAAGCCGTTGAGCTGGTTGACGAGAACACTATTTGTGTGGCTGCAATCTTGGGTTCAACTTACAACGGAGAGTTCGAAGATGTGAAGCTCCTAAATGATCTACTTCTAGAGAAAAACAAGCAAACTGGATGGGATACACCTATTCATGTGGATGCTGCTAGTGGTGGCTTTATTGCTCCATTCCTTTATCCAGAACTAGAATGGGATTTCAGACTCCCATTGGTGAAGAGCATAAATGTTAGTGGCCACAAGTATGGTCTTGTTTATGCTGGAATTGGTTGGGTCATATGGAGGACCAAGGATGACTTGCCAGAAGACCTTGTCTTCCATATTAATTACCTTGGTGCTGACCAACCCACCTTCACCCTCAATTTCTCTAAAGGTTCTAGTCAGATAATTGCTCAATATTATCAGCTAATTCGCCTTGGCCAAGAGGGGTACCGTAGCATAATGGAGAACTGCAGAGAAAACGCAATGGTGGTGAAGGAGCATTTGGACAAGAGTGGACGGTTTAACATACTCTCAAAAGACAATGGTGTTCCAGTGGTGGCATTTTCCTTGAAAGACAGAAGCGAATTCGATGAGTACAAGATATCAGAGATGTTGCGGCGCCACGGTTGGATCGTGCCAGCATATCCAATGCCACCTGCGGCTCAGCACATCAATGTGCTTCGTGTGGTCATAAGAGCAGAGTTTTCACGCACTCTTGCTGAACGCCTTGTGTTTGACATACACAATGTGTTGCATGAACTTGAAACAGAACATCCCCACAAAGTGACCAAAAACATTGAGGAAGACAAAACTCACACTGCGTTGGATGCGCATAGGGAAATCATTGCCCAAGAATCCAACAAGCGTCAGAAAATCGTGGCTGCGTAG 1458 0.4568 MVFPKPPSESDLFLHSNFASRYATDSLPRFCMPEDSMPKEAAYQNIHDELQLDAIPKLNLASFVTTSMEEECNKLIMESINKNYVDMDEYPITTDLHNRCVNMIARLFHAEIGENETAIGAGTVGSSEAIMLAGLAFKKKWQNKRKAEGKPYDKPNLVTGSNVQVCWEKFARYFEVELREVEVREGYYVMDPAKAVELVDENTICVAAILGSTYNGEFEDVKLLNDLLLEKNKQTGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRTKDDLPEDLVFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGQEGYRSIMENCRENAMVVKEHLDKSGRFNILSKDNGVPVVAFSLKDRSEFDEYKISEMLRRHGWIVPAYPMPPAAQHINVLRVVIRAEFSRTLAERLVFDIHNVLHELETEHPHKVTKNIEEDKTHTALDAHREIIAQESNKRQKIVAA 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01658 485 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Cca09g01658 485 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
Cca09g01658 485 Gene3D - 361 447 - -
Cca09g01658 485 PANTHER GLUTAMATE DECARBOXYLASE 1 484 - -
Cca09g01658 485 PANTHER GLUTAMATE DECARBOXYLASE 1 484 IPR010107 GO:0004351|GO:0006536|GO:0030170
Cca09g01658 485 CDD DOPA_deC_like 59 437 - -
Cca09g01658 485 SUPERFAMILY PLP-dependent transferases 16 445 IPR015424 -
Cca09g01658 485 Gene3D - 1 65 - -
Cca09g01658 485 Gene3D - 66 360 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01658 Cca-Chr9 40495507 40497839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01658 1 456 Calmodulin-binding Proteins AT5G17330 78.947 0.0 759
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01658 K01580 - gmx:100812201 895.575