Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01655 ATGGCAGCCCAACAAACTCAGACTCAGCTTCAGCCACAACAGCCCACACCCTCTTCGCAAGATGAGGCCTTGAAGAGGAACACCGATTGTGTTTACTTCCTTGCATCTCCCTTGACATGCAAAAAGGGGATTGAATGTGAGTACCGCCATAGCGAGTATGCACGTGTTAATCCTAGGGATTGTCGGTACTGGTTGAATGGCAATTGCTTGAATCCCAAATGTCCATTTCGTCATCCGCCTCTTGATGGCTTGTTAGGAACACAGGCAGCAACGGCTGGTGGGCCATCTGGGCCATCTGTACCCCCATCACAGATTCCAACAGCATCTGCAACACATGTACCTTATAATCCCAGTAAACAAGCCGTCCCTTGCATTTTCTTCCAAAAGGGGCTTTGCTTAAAAGGTGACAGATGTGCCTTCTTGCATGGACCTCCTACTCCTAACACTGGCAATAAAGTAGCTGCTCAGGTTCCAGTGACTAGCCAAGGGGCTGAGAATCCTAGTTTTAAGAAGCCTTTTGGCAGCATTGAAAAGCACACTCAGGAAAGGAAAAATTCCCTAGGAAATGTTGTGAAGTCAGGTGGAGCTCCTGAAGCTAAACTTGCTCCAAAAGTTGAGATTGCTCCTCAAAGAAATATGTTTGAGTTGGAGAAGAAAGTGCCACCACCATCTGCGGGATTTGATAATGAGGCTTCTAGATTTAAGACAGGTTCTCCACCAGTGACCAATGGCCCTATTGTAACTCGGTCAAACCGCCTGCATCAAGCTCGTGTACCAGATGATCACAATTTCCACAGTGGTAAGGACAGTGATGAGTTTCTCAGAGAATCATCTCCTGGGTTTGATGTTCTTGTAGCTGATGAACTTAGGAATTCTGATTACTACCATGGGGAAGATGAATTTGGTAAAGCAAGAGGTCAAGATGAAAGGAACTTAGACTCTTTGAATGAATATGATTTAGGACATTCTGGTGATTATAGTTTAGCAGCTGATATTGATCGTGAAAGATTCCGTGGGCCCCAAGGTTATGAGTCATATGATCACATGCAGGAGCCATATATTTGGGAGCAGCACAGAAAGGCTTCCACCCATTTAGACAGAAGGTCTCGCCGCAGATCTGACAGCCCTGAAAATGTCGAGGTCTCAGATCTCCGACATCATTTATCCAAGCGTAGGAAGGGCAATGGTTTGAAGTCTGTTGTCAGTCATGATTATGCCCTTGAGGGCCGTGGTGAGGAACAAAGTCAAAGGTCCTTGTCTAGGAAGGATTCACTCCAGTTACCTCTGAATGAGAGCTCCCTTGGTAACCGCTTTCGAGGTAGAATAAAACTTCCATCAGATGGGGGTGATGATCAGCTAGACAGGGAGGACAGAGGAAGATTTAGGGGCAGATTGTCATCTGGAAGGTTACAGGTCACTCACCAGGGAAGGATCCATGACAGAATGAGAGGAAGGTTGCAAGATGATGAAAGGAGAATCTCCAAGGATCGATTAGTGGGGAGAGAACTAATGGGTGATAGGAGTGATTTTGCTGGGCCAAAAAGTCTTGCTGAACTTAAAAATGGGAGGAACACTGAGAATAAGGATCAACAATCACTGGGAAGGAGAAGAAGTTTAAGGGATCAGCCACAATCTGAAGATTTTGATCAGTTTGAAGGTCCAAAGCCTCTCAGTGAAATTCTGAAGGAGAAGAGAGGAGCTGGAGCTGGTGCAGCCTCCAGGAATGGTAATTCATCTGACAATAAGAATGAAGAAGTTACCAATGGCTCAGATCCTATGCCTGTCACAAACACACAAAATGGAGTGCTGTCTGAGACCAAGGAAGATGTCAACAATCATCTGCTAAACAATGAAGAAACCAAGCTTGATGTCACTGATGCTGCTGGAGGAGACACTGATGCAACTCATGGTCAATCATACGGGGATCGACAGTACGATGAAGCTGCCGAGGATCAGGATTATGTAGGTGATGATCTGAGAGATGTGGACTATGAGTTTGAACAAGGTGATGAGTATTATGAGTATGAAGGTGATGAGGGTGAAAATCCAGAATACATGGATGAAGATGAGGATGCCGATGAATTTGCTAAGAAGATTGGTGTCATTCATTCGTGA 2115 0.4534 MAAQQTQTQLQPQQPTPSSQDEALKRNTDCVYFLASPLTCKKGIECEYRHSEYARVNPRDCRYWLNGNCLNPKCPFRHPPLDGLLGTQAATAGGPSGPSVPPSQIPTASATHVPYNPSKQAVPCIFFQKGLCLKGDRCAFLHGPPTPNTGNKVAAQVPVTSQGAENPSFKKPFGSIEKHTQERKNSLGNVVKSGGAPEAKLAPKVEIAPQRNMFELEKKVPPPSAGFDNEASRFKTGSPPVTNGPIVTRSNRLHQARVPDDHNFHSGKDSDEFLRESSPGFDVLVADELRNSDYYHGEDEFGKARGQDERNLDSLNEYDLGHSGDYSLAADIDRERFRGPQGYESYDHMQEPYIWEQHRKASTHLDRRSRRRSDSPENVEVSDLRHHLSKRRKGNGLKSVVSHDYALEGRGEEQSQRSLSRKDSLQLPLNESSLGNRFRGRIKLPSDGGDDQLDREDRGRFRGRLSSGRLQVTHQGRIHDRMRGRLQDDERRISKDRLVGRELMGDRSDFAGPKSLAELKNGRNTENKDQQSLGRRRSLRDQPQSEDFDQFEGPKPLSEILKEKRGAGAGAASRNGNSSDNKNEEVTNGSDPMPVTNTQNGVLSETKEDVNNHLLNNEETKLDVTDAAGGDTDATHGQSYGDRQYDEAAEDQDYVGDDLRDVDYEFEQGDEYYEYEGDEGENPEYMDEDEDADEFAKKIGVIHS 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01655 704 MobiDBLite consensus disorder prediction 221 247 - -
Cca09g01655 704 MobiDBLite consensus disorder prediction 672 691 - -
Cca09g01655 704 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 11 704 - -
Cca09g01655 704 ProSiteProfiles Zinc finger C3H1-type profile. 24 53 IPR000571 GO:0046872
Cca09g01655 704 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 122 144 IPR000571 GO:0046872
Cca09g01655 704 Gene3D - 15 81 - -
Cca09g01655 704 Gene3D - 111 184 - -
Cca09g01655 704 MobiDBLite consensus disorder prediction 360 387 - -
Cca09g01655 704 MobiDBLite consensus disorder prediction 572 610 - -
Cca09g01655 704 MobiDBLite consensus disorder prediction 521 562 - -
Cca09g01655 704 ProSiteProfiles Zinc finger C3H1-type profile. 118 145 IPR000571 GO:0046872
Cca09g01655 704 MobiDBLite consensus disorder prediction 611 626 - -
Cca09g01655 704 ProSiteProfiles Zinc finger C3H1-type profile. 55 81 IPR000571 GO:0046872
Cca09g01655 704 MobiDBLite consensus disorder prediction 360 475 - -
Cca09g01655 704 MobiDBLite consensus disorder prediction 405 419 - -
Cca09g01655 704 SUPERFAMILY CCCH zinc finger 119 143 IPR036855 GO:0046872
Cca09g01655 704 SMART c3hfinal6 118 144 IPR000571 GO:0046872
Cca09g01655 704 SMART c3hfinal6 25 52 IPR000571 GO:0046872
Cca09g01655 704 SMART c3hfinal6 57 80 IPR000571 GO:0046872
Cca09g01655 704 MobiDBLite consensus disorder prediction 443 464 - -
Cca09g01655 704 MobiDBLite consensus disorder prediction 1 22 - -
Cca09g01655 704 Pfam Zinc-finger containing family 25 79 IPR041686 -
Cca09g01655 704 PANTHER ZINC FINGER CCCH-TYPE-CONTAINING 11A 11 704 - -
Cca09g01655 704 MobiDBLite consensus disorder prediction 497 657 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01655 Cca-Chr9 40461998 40465782 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Cca09g01655 zf-CCCH_3 4e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01655 - - gmx:100787836 1061.21