Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01647 ATGGTGAGGTTTTCAACACTCGTAGTTTTGTTCCTTTTGTGTTTTTCTCCCATGCTACTAGTCCTTGGTCAGGGCAATTCAGACAGTGACATTACTTTGAGAGTGTTGTTGGAAGTGAAGAAGTCTTTTGTTGAAGATCCAAAAAATGTTCTAAGTGATTGGTCAGAGGATAACACTGACTACTGCAGTTGGAGAGGGGTGTCGTGTGAATTGAACACAAAGTCAAACCCTTTAGATGGTGACTCGGTGCAAGTGGTGGGTCTCAACCTTTCTGACTCGTCACTCACCGGGTCTATATCACCTTCACTCGGTCATTTGCAAAACCTGCTCCACCTTGATCTCTCCTCCAACAGCCTCACGGGTCCCATTCCACCTAATCTCTCTAACCTCACTTCCTTGGAATCTCTTCTTCTCTTCTCCAACCAACTCACGGGTCATATTCCCACTGAGTTTGGCTCCCTCACGAGTCTCCGTGTCATGCGACTCGGTGACAATGCATTAACGGGAACGATTCCCGAGTCTCTTGGAAAATTGGTCAACCTGGTCAACCTCGGCTTGGCTTCCTGTGGACTCACCGGGTCGATTCCGAGTCAACTCGGTCAACTCAGTCTCCTGGAAAATCTGATTCTGCAGGACAACGAGTTGATGGGTCCGATTCCGACCGAGTTGGGGAACTGCTCAAGCCTCACCATCTTCACTGCAGCTAACAACAAACTCAATGGCTCAATCCCGAGTGAACTGAGTCGACTCAGGAATCTGCAAATTCTCAACTTTGCCAACAATAGCCTATCAGGGGAGATTCCGAGTCAACTCGGTGACATGAGTGAACTCGTTTACCTGAACTTCATGGGGAACCAGCTCGAGGGTGCTATTCCACCGTCTCTAGCTCAACTGGGTAATCTTCAAAATCTGGACTTGTCAATGAACAAGCTCAGTGGAGGAATCCCAGAGGAGTTAGGCAACATGGGTGAGCTAGCTTACATGGTTCTGTCTGGTAACAACCTTAATTGTGTCATACCAAGAACCATATGTTCCAATGCAACAAGTTTGGAACACTTGATGCTGTCAGGAAGTGGACTTTATGATGAGATTCCGGCTGAGTTGAGTCAGTGCCAGCAACTGAAGCAACTTGATTTGTCCAACAATGCACTCAATGGGTCCATACCTCTTGAGCTTTACGGGTTGCAGGGGCTAACTGATCTTTTGCTGAACAATAACAGCTTGGTTGGTTCCATCTCTCCCTTCATAGGGAACCTCAGTGGCTTGCAGACTCTTGCTTTGTTTCACAACAATTTGCAAGGTGCTCTGCCAAGAGAGATTGGAATGCTTGGCAACTTGGAAATTTTGTATCTTTATGATAATCAATTGTCAGGGGCTATACCTATGGAGATTGGTAATTGTTCTAGCTTGCAAATGGTTGATTTCTTCGGAAACCATTTCAGTGGGGAAATTCCCATCACTGTTGGAAGGCTGAAAGAGTTGAATTTCCTTCACCTTAGACAGAATGAGCTTGTGGGTGAGATTCCAGCCACCTTGGGTAATTGTAATAAGCTGAACATTCTGGATTTGGCTGACAATCAGCTCTCAGGTGCAATTCCTGCAACTTTTGGATTCCTCACGGCATTGCAACAGCTCATGCTCTACAACAATTCTCTTGAAGGTAACCTCCCTCACCAACTGATAAATGTAGCAAACTTGACCAGAGTGAATCTTTCAAAGAACAGATTGAATGGTAGTATGGTTGCATTGTGTAGCTCCCAATCTTTTCTTTCTTTCGATGTTATCAACAACGAGTTTGACGGTGAAATTCCATCTCAAATTGGAAACTCGCCATCCCTTGAGAGACTAAGATTAGGTAACAATAAATTTTCTGGTGAAATTCCAAGAACATTGGGAAAAATCCCTGAGCTGTCATTGTTAGACCTCTCAGGGAATTCACTCACTGGACCAATACCAACTGAGCTTTCGTTGTGCAACAAACTGAGTTATATTGATTTAAACAGTAACCTTCTTTTTGGACAAATACCTTCATGGCTTGGAAATTTGCCTCAGTTGGGAGAGCTTAAGCTCTCTTCAAATAATTTTTCTGGACCTCTTCCATTAGGCCTATTCAAATGTTCCAAGTTGCTAGTTCTCTCTCTAAATGACAACTCTCTGAACGGAAGTCTCCCAGCTGATATTGGCGATCTTGCATACCTTAATGTCCTCAGACTTCACAACAATAAGTTTTCTGGACCAATCCCTCCAGAGATAGGTAAGTTGAGCAAGCTTTATGAGCTCCAGCTCTCCAGCAATAGCTTCAATGGTGAGATGCCAGCTGAGATTGGAAAACTTCAAAATCTTCAAATCATTTTAGACCTTAGTTACAATAATCTCTCAGGTCACATCCCACCTTCTCTTGGGACACTGTCAAAGTTAGAAGCATTTGATCTTTCACACAATCAACTCACTGGAGAAATCCCTCCAGAAGTTGGGGAAATGAGCAGTTTGGGAAAGCTTGATCTCTCTTACAACAGCCTTCAAGGAAAATTGGATAAGCAGTTCTCCCGCTGGCCAGGCGAAGCATTTGAAGGAAACCAACATCTTTGTGGAAGCCCTCTTGAGCGCTGCCAGCGTGATGATGCTTCCGGGAGTGCAGGCCTAAACGAGTCATCAATAGTGATAATCTCTTCCATTTCAACTTTAGCTGCAATTGCACTTTTGATACTTGCAGTGAGAATTTTCTCCAAAAACAAGCAAGAATTTTGCAGGAAAGCCAGTGAAGTGAATTACATTTACTCTTCCTCTTCATCACAAGCACAGAGAAGGCCACTGTTCCAACTAAATGCTGCTGGAAAGAGAGATTTCAGATGGGAAGACATCATGGATGCCACGAACAACCTAAGTGATGACTTCATGATTGGTTCAGGAGGTTCAGGGAAAATATACAAAGCTGAATTGGCCACTGGAGAGACAGTGGCTGTCAAGAAGATTTCAACAAAAGACGAATTTCTGTTAAACAAAAGCTTCATAAGAGAAGTTAAGACACTAGGGAGGATCAGGCATAGACATCTGGTGAAGCTAATAGGATATTGTACCAATAGAAACAAAGAAGCATGTTGGAATCTGCTGATATATGAGTACATGGAGAATGGGAGCGTATGGGATTGGCTTCATGGGAAACCAGCCAAGGCAAGCAAAGTAAAGAGGAGCCTTGATTGGGAGACAAGACTCAAAATTGCTGTGGGATTAGCTCAAGGTGTGGAGTACCTCCATCATGATTGTGTGCCAAAGATCATTCACAGGGACATCAAATCCAGCAATGTGTTGCTAGATTCCAAAATGGAGGCACACTTGGGAGATTTTGGACTGGCAAAAGCACTAAATGAGAATTATGATTCCAATACTGAGTCTAATTCTTGGTTTGCCGGGTCTTATGGCTACATAGCTCCAGAGTATGCATTCTCCCTACATGCAACAGAGAAAAGTGATGTTTACAGCATGGGAATTGTGCTTATGGAACTTGTCAGTGGTAAAATGCCAACAAATGAAATCTTTGGAGCTGAGATGGACATGGTGAGATGGGTAGAGATGTACATTAATATGCATGGCTCTGCCCGTGAGGAATTGGTAGATCCTGAACTGAAACCTCTTTTACCTGGCGAAGAATTTGCTGTATTCCAAGTGCTTGAAATAGCCTTACAGTGCACGAAAACTACACCACAGCAGAGGCCATCTTCGAGGAAAGTCTGTGATCTTCTCCTCCATGTCTTCAACAACGGGATGGTGGACTTTGAGAAACTGAATTTGAATCATTACAAGTGA 3804 0.4374 MVRFSTLVVLFLLCFSPMLLVLGQGNSDSDITLRVLLEVKKSFVEDPKNVLSDWSEDNTDYCSWRGVSCELNTKSNPLDGDSVQVVGLNLSDSSLTGSISPSLGHLQNLLHLDLSSNSLTGPIPPNLSNLTSLESLLLFSNQLTGHIPTEFGSLTSLRVMRLGDNALTGTIPESLGKLVNLVNLGLASCGLTGSIPSQLGQLSLLENLILQDNELMGPIPTELGNCSSLTIFTAANNKLNGSIPSELSRLRNLQILNFANNSLSGEIPSQLGDMSELVYLNFMGNQLEGAIPPSLAQLGNLQNLDLSMNKLSGGIPEELGNMGELAYMVLSGNNLNCVIPRTICSNATSLEHLMLSGSGLYDEIPAELSQCQQLKQLDLSNNALNGSIPLELYGLQGLTDLLLNNNSLVGSISPFIGNLSGLQTLALFHNNLQGALPREIGMLGNLEILYLYDNQLSGAIPMEIGNCSSLQMVDFFGNHFSGEIPITVGRLKELNFLHLRQNELVGEIPATLGNCNKLNILDLADNQLSGAIPATFGFLTALQQLMLYNNSLEGNLPHQLINVANLTRVNLSKNRLNGSMVALCSSQSFLSFDVINNEFDGEIPSQIGNSPSLERLRLGNNKFSGEIPRTLGKIPELSLLDLSGNSLTGPIPTELSLCNKLSYIDLNSNLLFGQIPSWLGNLPQLGELKLSSNNFSGPLPLGLFKCSKLLVLSLNDNSLNGSLPADIGDLAYLNVLRLHNNKFSGPIPPEIGKLSKLYELQLSSNSFNGEMPAEIGKLQNLQIILDLSYNNLSGHIPPSLGTLSKLEAFDLSHNQLTGEIPPEVGEMSSLGKLDLSYNSLQGKLDKQFSRWPGEAFEGNQHLCGSPLERCQRDDASGSAGLNESSIVIISSISTLAAIALLILAVRIFSKNKQEFCRKASEVNYIYSSSSSQAQRRPLFQLNAAGKRDFRWEDIMDATNNLSDDFMIGSGGSGKIYKAELATGETVAVKKISTKDEFLLNKSFIREVKTLGRIRHRHLVKLIGYCTNRNKEACWNLLIYEYMENGSVWDWLHGKPAKASKVKRSLDWETRLKIAVGLAQGVEYLHHDCVPKIIHRDIKSSNVLLDSKMEAHLGDFGLAKALNENYDSNTESNSWFAGSYGYIAPEYAFSLHATEKSDVYSMGIVLMELVSGKMPTNEIFGAEMDMVRWVEMYINMHGSAREELVDPELKPLLPGEEFAVFQVLEIALQCTKTTPQQRPSSRKVCDLLLHVFNNGMVDFEKLNLNHYK 1267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01647 1267 SUPERFAMILY L domain-like 315 670 - -
Cca09g01647 1267 Pfam Leucine rich repeat N-terminal domain 34 69 IPR013210 -
Cca09g01647 1267 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1092 1104 IPR008271 GO:0004672|GO:0006468
Cca09g01647 1267 ProSitePatterns Protein kinases ATP-binding region signature. 967 990 IPR017441 GO:0005524
Cca09g01647 1267 Gene3D Phosphorylase Kinase; domain 1 921 1041 - -
Cca09g01647 1267 SUPERFAMILY RNI-like 87 385 - -
Cca09g01647 1267 Pfam Leucine rich repeat 517 576 IPR001611 GO:0005515
Cca09g01647 1267 Gene3D Ribonuclease Inhibitor 278 342 IPR032675 -
Cca09g01647 1267 Gene3D Ribonuclease Inhibitor 203 277 IPR032675 -
Cca09g01647 1267 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 3 1261 - -
Cca09g01647 1267 SMART serkin_6 961 1252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01647 1267 PRINTS Leucine-rich repeat signature 374 387 - -
Cca09g01647 1267 PRINTS Leucine-rich repeat signature 803 816 - -
Cca09g01647 1267 SMART LRR_typ_2 491 515 IPR003591 -
Cca09g01647 1267 SMART LRR_typ_2 250 274 IPR003591 -
Cca09g01647 1267 SMART LRR_typ_2 778 803 IPR003591 -
Cca09g01647 1267 SMART LRR_typ_2 827 858 IPR003591 -
Cca09g01647 1267 SMART LRR_typ_2 539 563 IPR003591 -
Cca09g01647 1267 SMART LRR_typ_2 634 658 IPR003591 -
Cca09g01647 1267 SMART LRR_typ_2 395 419 IPR003591 -
Cca09g01647 1267 SMART LRR_typ_2 154 178 IPR003591 -
Cca09g01647 1267 SMART LRR_typ_2 130 153 IPR003591 -
Cca09g01647 1267 SMART LRR_typ_2 202 226 IPR003591 -
Cca09g01647 1267 SMART LRR_typ_2 730 754 IPR003591 -
Cca09g01647 1267 SMART LRR_typ_2 298 322 IPR003591 -
Cca09g01647 1267 SMART LRR_typ_2 443 467 IPR003591 -
Cca09g01647 1267 SMART LRR_typ_2 106 129 IPR003591 -
Cca09g01647 1267 SMART LRR_typ_2 682 706 IPR003591 -
Cca09g01647 1267 Pfam Protein kinase domain 966 1244 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01647 1267 SUPERFAMILY Protein kinase-like (PK-like) 945 1247 IPR011009 -
Cca09g01647 1267 ProSiteProfiles Protein kinase domain profile. 961 1252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01647 1267 Gene3D Ribonuclease Inhibitor 32 198 IPR032675 -
Cca09g01647 1267 Gene3D Ribonuclease Inhibitor 585 874 IPR032675 -
Cca09g01647 1267 Gene3D Ribonuclease Inhibitor 343 584 IPR032675 -
Cca09g01647 1267 Pfam Leucine Rich Repeat 108 130 IPR001611 GO:0005515
Cca09g01647 1267 Gene3D Transferase(Phosphotransferase) domain 1 1042 1260 - -
Cca09g01647 1267 SUPERFAMILY L domain-like 590 867 - -
Cca09g01647 1267 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE GSO1 3 1261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01647 Cca-Chr9 40330459 40335206 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01647 35 707 Receptor kinase-like Gene Family AT1G17750 36.672 2.50e-98 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca09g01647 Pkinase 4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01647 - - gmx:100801889 2212.19