Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01643 ATGCTCATCAAACTGCTTGCTGCATTTGGCTTATCTCACAAAGAAAAGCGATCCTCATATGCCCCCGAGAATGGCGTGCGGTATGATGGAATTTATAGAATTGAAAAGTGCTGGCAGATAGCTGGATTGCAGGGTTTCAAAGTTTGCCGGTATCTATTTGTTAGATGTGACAATGAACCCGCCCCGTGGACAAGCGATGATCATGGAGATAGGCCCAGACCCTTGCCCGTAATTCGTGAACTGAAAAAGGCTACAGTCATATTTGAAAGGACCGAGACTCCATCTTGGGATTTTGATCATTGCGTACAAGATTCTATTGTCTAA 324 0.4444 MLIKLLAAFGLSHKEKRSSYAPENGVRYDGIYRIEKCWQIAGLQGFKVCRYLFVRCDNEPAPWTSDDHGDRPRPLPVIRELKKATVIFERTETPSWDFDHCVQDSIV 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01643 107 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 12 100 IPR045134 -
Cca09g01643 107 Pfam SAD/SRA domain 14 58 IPR003105 -
Cca09g01643 107 ProSiteProfiles YDG domain profile. 1 55 IPR003105 -
Cca09g01643 107 Gene3D - 11 93 IPR036987 -
Cca09g01643 107 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 12 100 - -
Cca09g01643 107 SUPERFAMILY PUA domain-like 13 83 IPR015947 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01643 12 100 C2H2 Transcription Factor Family AT5G39550 74.444 1.96e-43 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01643 K10638 - gmx:100801535 187.963