Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01641 ATGCTACATCTTGACATTCCTTATTCTTCACATGATAGCTCAAAAGGAAGTTTGCTAAACCAAACGGTTGAATTTCCTGCTTTAGGTCAACATTTTCCTATTCCTTATGAGCTTATTCATGTTCCTGCCACTTATCAAAATATTCCACCTCCTAATCCTGCTTTCCATCAATATAAGATTTCACCTCTTGATTGTTATATCCCCGATATGAGTGAAATTCTTGATCAAAATAATCCCACACCGATTTCTTCTCATGATCAAGATAATAAAATTCCTGTTGTTGAACAAGAAATTCAAGTACCTAATCATGGTACAGATGTACCTTCTCACACTCCTACCCCTCTTACTCAAGATATTTCTACCTTTGTTCATGATAATAAATCCCCTCTGGAAATAGAGTTGGATGGAGTTCTTGAAATTTTGAAGAACGATGATAAGTTATCCCAACTTATGATGAGCCAAAGTACAAATAAGAAAAATGCATTCATCTCACAAATTGCAAATACTGCAATGGAAGAATTGATGAAGCTTTTGAAAACGAACGAGCCCTTATGGTTAAAGTCTCTACATGACGGAAAGTTCATTCTTCAGCGTGACAGCTACCAAAGGATGTTTCTTAGGATTAATTGCTTAAAAGGGCCTCATGCACGTATAGAATCATCAAAAGATTCACGAGTAGTGAACATGAGTTTGACACAATTGGTTGAAATGTTTATAAATTCGGACAAATGGATTGATCTTTTCCCAACAATTGTTAAGAAAGCCCAAACAGTCAAAGTATTTGAAAGCGGTTCTTTAGAAAACCGAAATGGAGCTTTGCAGTTGATGAATGCAAAAATGCACGTTCTTTCACATTTGGTTCCAACTCGGACATTCCACTTTCTTCGTTATTGTAAACAAATTGAAGTAGGTACATGGGTTATAGTAGATGTGTCAGTTGACTCCTCAGAAGATAAAACCACTGTTTCTTGCGCTTGGAGGCTTCCATCTGGATGCCTGATTCAAGAAATTACTCAGGGATTGTGTAGGGTTTCTTGGATGGAGCACGTGGAAGTGAATGACAATATTCAAACTCATCAGCTTTTTAGAGATATTATTATTAATACATATGGAGCCAGAAGGTGGATTTTGACCCTTAAAAGAATGTGTGAGAGATTTGAGTGCGCCTCAACCGAAACAATACCTAGTTATGAGGCTAGAGGAGTGGTTAAATCACTTGAAGGAAGGAAGAGTATAATGCAATTGGCTCATCGTATGGTTAAGATTTTCTGTCGGACTTTGGACATGGAAGATAACACGAATTTCCCACATTTAACTAGGATTAATAATGGTGAGGTTACAATATCAGTTCGCATGAATAAAACAGTCTCAGATGTTCCAAAAGGCATGATTCTCAGTGCTGCTACCTCCTTTTGGCTTCCTCTCTCTCCACAAAGTGTTTTTGACTACATGATAGATAACAAGGAACGAGCAAAGTGGGAACCTCTTTGGTATGGAAATCCGGGGCACGAGCTTCAACGCATTTCAACTGGAAGTAATCCTAGAAATTTTATTTCAATTACACGGCCTGTTAGCTGTAGTGAGAACAATAACACAGTGACTCTTCGAGAAAGTTATGCAGATGCTTTGGGATCTATGATGGTATACTCAGCTTTTGATATGGAGATAATGAATTTTGCGATGAGGGGAGAAGACACGTCACAATTGCTGGTTCTTCCCTCTGGCTTTACCATAAGTTGGGATGGCCAGCCAAATGCTCTTGAAGGATCATCTGGACAAGTTGGGAGATCAAGAGGTTCTGTGGTGACTCTAATGTTACAGCTTCTAGCTTCAAGTTCATCTGAAATGGACAAAGTAGACATGGAATTTGTAGGTTATGTTACTACACTTCTGTCCTCAACAGTGGAGAAAATTAAATCTGCTTTGAATCGTACCAATTAA 1941 0.3818 MLHLDIPYSSHDSSKGSLLNQTVEFPALGQHFPIPYELIHVPATYQNIPPPNPAFHQYKISPLDCYIPDMSEILDQNNPTPISSHDQDNKIPVVEQEIQVPNHGTDVPSHTPTPLTQDISTFVHDNKSPLEIELDGVLEILKNDDKLSQLMMSQSTNKKNAFISQIANTAMEELMKLLKTNEPLWLKSLHDGKFILQRDSYQRMFLRINCLKGPHARIESSKDSRVVNMSLTQLVEMFINSDKWIDLFPTIVKKAQTVKVFESGSLENRNGALQLMNAKMHVLSHLVPTRTFHFLRYCKQIEVGTWVIVDVSVDSSEDKTTVSCAWRLPSGCLIQEITQGLCRVSWMEHVEVNDNIQTHQLFRDIIINTYGARRWILTLKRMCERFECASTETIPSYEARGVVKSLEGRKSIMQLAHRMVKIFCRTLDMEDNTNFPHLTRINNGEVTISVRMNKTVSDVPKGMILSAATSFWLPLSPQSVFDYMIDNKERAKWEPLWYGNPGHELQRISTGSNPRNFISITRPVSCSENNNTVTLRESYADALGSMMVYSAFDMEIMNFAMRGEDTSQLLVLPSGFTISWDGQPNALEGSSGQVGRSRGSVVTLMLQLLASSSSEMDKVDMEFVGYVTTLLSSTVEKIKSALNRTN 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01641 646 ProSiteProfiles START domain profile. 156 388 IPR002913 GO:0008289
Cca09g01641 646 SUPERFAMILY Bet v1-like 163 386 - -
Cca09g01641 646 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 147 644 IPR042160 -
Cca09g01641 646 SUPERFAMILY Bet v1-like 408 583 - -
Cca09g01641 646 Gene3D - 163 382 IPR023393 -
Cca09g01641 646 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 147 644 - -
Cca09g01641 646 Pfam START domain 166 385 IPR002913 GO:0008289
Cca09g01641 646 CDD START_ArGLABRA2_like 163 384 - -
Cca09g01641 646 SMART START_1 165 385 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01641 Cca-Chr9 40272509 40277152 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01641 162 643 Homeobox Transcription Factor Family AT1G73360 41.429 1.94e-112 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01641 K09338 - gmx:100783053 714.531