Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01640 ATGACGTATTGCTGCGTGCCAACTTCCTCTAAGCCTAGGTATATTTCTTCACTAGTATTTGATAAAATGCGTCCATCTACCTCAAGTGGATCAACTCTTGGTCAACAATGTGTTAACAATTATCGTCATCGTCACAATCCTGATAAGATAGCTAGACTTGAAGAAATATTCAATGAATGTGCACATCCGGACGAAAGTAGACGTCGCCAAATTAGTGAAGAGCTCGGGCTTGATGCTAAACAAGTAAAATTTTGGTTTCAAAATAAGAAGACACAATTGAAGACTTTAAATGAGCGATTAGACAACCATGTTCTTCGACTTGACAATGCAAGGTTGCAATCAGAAAACCACAGAATGAGTGAGACTTTGAAGAATTTACTTTGCGTACCTTGTGGGGGTCAAGTCATGGGAGTAGAAGAGCGTGAACTTTCTTTGCAAATCTTAAGAGCCCAAAATTTTCTATTAAATACAGAGGCTAGTAAACTATCTTATTTAATTGATTCTCTTATGATAACCACACTTCTGGTAAACAATGGGATAAATCCAAGGTTGCTTCCTCCCTTTCCTTCTTCACATGATACCTCACAAGGAAGTTTGCAAAACCAAATGCCTGGTATTCCTGTTCAAAATCAGTTCATTCCTAGTCAAGATCATCATATTCATGCTCAAAATCAGCTCGTTCCTCCTCATGACCATCATATTCATGCTTGTGATCAACATACTCCTACTCTTAATCAACTCATTCCTAGTCAGAGTTTGCTCATCCATACTCATGATCAACATATTCCTATTACTAATCAGCTTATTCTTTGTGCATCTCATCAGTATACTCCTGTTGTTACTACTCCGGCCATTGATCAAAATATTCCAGCTCATCATCCAGATATTCATCATTTGACTTCTTCTTCTGATTATAATATTCCAGGTTTGAGTACTACTCTTGCTCAGAATATTCCCACACTGATTTCTACTTGTAAACAAAATAATAACATTCCTGTTGTTGAGCAAGAAATTCAAGAGCCTAATCATGGTATAATTAATATTCTTTCTCTTACCTTGGATCAAGATATGCCACCTTTGGGTCGAGATATTCCTGCCATAAATCAGTATAATATGCCCCATCTTGATTTGGATGCAATTGTTGAAATTCGGAACAACGATATGTTGATGAGGCAAAGTACAAATACGGAAGATGCACTTATGTTGCAGATTGCAAATAATGCAATGGAAGAATTAATGAAGCTTCTGAGCATGAATGAGCCCTTTTGGTTCAGATCTCTACATGACGGAAAATTCATTCTTCAGCATGAGAGTTACCAAAAGACATTTCCTTGGAGTGATTGCTTGAGAGCAGGACCTCATTCACGTATAGAGTCATCAAAAGATTTACGAGTAGTGAGCATGAGTGGGACACAACTGGTTGAAATGTTTTTAAATTCGGACAAATGGGTTGATCTATTCCCAACAATTGTTAAAAAAGCCCAAACAATCCAAGTATTCGAAAGCGGGTTGTTAGGAAATCGAAATGGAGCTTTGCAGTTGATGAATGCAGAAATGCACATTCTTTCACATTTGGTTCCAACTCGGGAATTCCTCTTCCTTCGTTATTGTAAACAAATTGAAGCAGGTGTATGGGTGATAGGGGATGTGTCACTTGATTCCTCAAAATATAAAACCAGTGTTTCTCAAGCTTGGAGGCTTCCCTCTGGATGCCTCATTCAAGAAATGACTCAGGGATTGTGCCGGGTTTCTTGGGTGGAGCATGTGAATGTGGATGACAATATCCAAACTCACGAGATTTTCAAAGATATTATTCACAATAATGCATATGGAGCAGAAAGATGGGTTTCAACACTTGAAAGAATGTGCGAGAGATTCGCATGCGCCTCGGTTGAAACTATACCTAGTTATGAGGCTGGAGGAGTGATTAGATCACTAGAAGGAAGGAAGAGTATAATTAAGCTGGCTCATCGTATGGTTAAGACTTTCTGTGGGAATTTGGACATGCAAGGTGACACAAACTTCCCACATTTAACCAAGATGAATGATGATGGCATTAGGCTATCTGTTCACGTGAATAACACAAAGCCAAATGCACCAAAAGGCATGATTCTCGGTGCTGCTACCACCTTTAGGCTTCCTTTCTCTCCACAAAATGTTTTTGATTACTTGATAGATAACAAGGAACGACCTAAGTGGGATGTTCTATGTTGTGGAAATGAAGGCTGCGAGATTCAACGCATCTCAACTGGAATTAATCCTGGAAATTATATTTCAATAATGCAGTCTTTCATCCCAAGAGAAAACAATATAATGATTCTCCAAGAAAGTTATGTAGATGCTTTGGGATCTATGTTGTCAAATGTTCCTGAAGGACAAGATGGACAAATTGATAAATCAGCAGGCTCGTTGGTGACTCTAATGTTTCAACTTCTTGCTTCCAGTCCATCTAAACTGGGCATGGTAGACATTGAATTTGTAGAGTGGGGTGAACTCTTCGTTACTCGTTCGCACACTATTGCAGCTCAGGTAtga 2535 0.387 MTYCCVPTSSKPRYISSLVFDKMRPSTSSGSTLGQQCVNNYRHRHNPDKIARLEEIFNECAHPDESRRRQISEELGLDAKQVKFWFQNKKTQLKTLNERLDNHVLRLDNARLQSENHRMSETLKNLLCVPCGGQVMGVEERELSLQILRAQNFLLNTEASKLSYLIDSLMITTLLVNNGINPRLLPPFPSSHDTSQGSLQNQMPGIPVQNQFIPSQDHHIHAQNQLVPPHDHHIHACDQHTPTLNQLIPSQSLLIHTHDQHIPITNQLILCASHQYTPVVTTPAIDQNIPAHHPDIHHLTSSSDYNIPGLSTTLAQNIPTLISTCKQNNNIPVVEQEIQEPNHGIINILSLTLDQDMPPLGRDIPAINQYNMPHLDLDAIVEIRNNDMLMRQSTNTEDALMLQIANNAMEELMKLLSMNEPFWFRSLHDGKFILQHESYQKTFPWSDCLRAGPHSRIESSKDLRVVSMSGTQLVEMFLNSDKWVDLFPTIVKKAQTIQVFESGLLGNRNGALQLMNAEMHILSHLVPTREFLFLRYCKQIEAGVWVIGDVSLDSSKYKTSVSQAWRLPSGCLIQEMTQGLCRVSWVEHVNVDDNIQTHEIFKDIIHNNAYGAERWVSTLERMCERFACASVETIPSYEAGGVIRSLEGRKSIIKLAHRMVKTFCGNLDMQGDTNFPHLTKMNDDGIRLSVHVNNTKPNAPKGMILGAATTFRLPFSPQNVFDYLIDNKERPKWDVLCCGNEGCEIQRISTGINPGNYISIMQSFIPRENNIMILQESYVDALGSMLSNVPEGQDGQIDKSAGSLVTLMFQLLASSPSKLGMVDIEFVEWGELFVTRSHTIAAQV 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01640 844 Coils Coil 93 113 - -
Cca09g01640 844 Gene3D - 403 616 IPR023393 -
Cca09g01640 844 SMART HOX_1 38 100 IPR001356 GO:0003677
Cca09g01640 844 ProSiteProfiles START domain profile. 394 628 IPR002913 GO:0008289
Cca09g01640 844 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 40 786 IPR042160 -
Cca09g01640 844 SUPERFAMILY Bet v1-like 397 626 - -
Cca09g01640 844 CDD homeodomain 42 94 IPR001356 GO:0003677
Cca09g01640 844 SUPERFAMILY Bet v1-like 648 760 - -
Cca09g01640 844 Gene3D - 33 106 - -
Cca09g01640 844 SMART START_1 403 625 IPR002913 GO:0008289
Cca09g01640 844 Pfam START domain 404 625 IPR002913 GO:0008289
Cca09g01640 844 CDD START_ArGLABRA2_like 399 624 - -
Cca09g01640 844 ProSitePatterns 'Homeobox' domain signature. 71 94 IPR017970 GO:0000981|GO:0006355
Cca09g01640 844 ProSiteProfiles 'Homeobox' domain profile. 36 96 IPR001356 GO:0003677
Cca09g01640 844 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 40 786 - -
Cca09g01640 844 SUPERFAMILY Homeodomain-like 19 96 IPR009057 -
Cca09g01640 844 Pfam Homeodomain 41 94 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01640 Cca-Chr9 40263797 40271009 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01640 373 790 Homeobox Transcription Factor Family AT1G73360 42.657 1.41e-106 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Cca09g01640 START 6.3e-36 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01640 K09338 - gmx:100783586 806.208