Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01639 ATGAGATATTTGCCTTTTTTAAGCACCACTATCCTTCCTACTTCTCTATTTTGTCTCACAACAAACTCTCTCTTTTGGAAAACAATTCCAAATCCCTCTGTCCCACATTGTCTATATGAAACTACTGTTTCCTACTCTGCATATTATCTAGTTTTCTTACCTTCTAGTATAGAAAGAGCAATGAGTACAGGAGACAGGCAAAGAATGCATGAACAAAGTGGTTGCTTTGATCCCAACACAATGGGAGAAAGTGTTACCTCTCTAAAGGATAACTTTCCTCAAAACCCTCTACCTCCATCACCTATGGTTGTGGTAGGCAACACCACAAACAGCAATAGCTTTGAAGAGAATCTCAAGCTTTCTGTGGATGAGCTCTCCTACAACCATCACAATCCAGAAGATGTCTCCACCTATGCAAATGGAGTCACTGCCTCATCAATTGACATCTCACATCCACAACATCTAGGTTTGAACATGGGGAACACCTTTaacaacaacaacaacaacaTGGATAACCATTTGGTGCAAGAGGTGATTGATGCCCTTTCCTATCAGCACTCCACTTGGGACCAGGAATCACAAGACATGGCATATGCTAATCacacacaacaacaacaacaaccaaatgaacaacaatttcaacaaAGTCAAAGCTACAACCCCTCTTCCATACTAGACCCTCCTTACCCTTCACCAGATCTCCTAAACCTTCTCCACTTACCAAGATGCTCAGCCTCATCTTTGCTCACAAACCCAACTCCAAATTTTCAAAATCCAATGGCCTTTCTTGGAGAGTTTCCAATAGGATCAGACAACACAAGTGCATGTGCATCCTCAGTTTTGTATGATCCTCTATTCCATCTCAACCTGCCTCCACAGCCTCCAGCCCTCAGAGAGCTGTTTCAGTCTCTCCCCCGTGGCTACAGCTTGCCAACCAACTCCAGGAATGGTTCACTCTTTGGTGGAGGGGATGAGATGGAGCCAGATGACATGGGAGTGCTCGAATTCAACAGGGTCACACCTTCTGTTGCCAAAGGAAGGGGTGGCAAAGCTACCAAACATTTTGCAACTGAGAAACAAAGAAGAGAGCAACTCAATGGAAAATACAAAATCTTGAGGAGTCTCATCCCAAACCCCACCAAGATTGATAGAGCATCTGTGGTGGGAGATGCCATTGACTATATAAGAGAACTGATTAGAACAGTCAATGAGCTCAAACTATTGGTGGAGAAGAAAAGATATGGGAAGGAGAGGTGCAAGAGGCCAAAAACAGAAGAAGATGCTGCTGAGAGCTGTAACATAAAGCCTTTTAGTGATCCAGACGGGGGCATAAGAACCTCATGGCTCCAGAGGAAATCCAAAGACAGTGAGGTTGATGTCCGAATTATCGACGATGATGTCACAATCAAACTCTTTCAGAGGAAGAAGATTAACTGTCTGGTGTTTGTCTCCAAAGTTCTGGATGAACTTCAGCTGGAACTTCACCATGTTGCAGGTGGACATGTTGGTGAATATTGCAGCTTCTTGTTTAATAGCAAGATAATTGAAGGTTCTTCTGTCTATGCAAGTGCCATAGCCAATAGGGTGATTGATGTTTTGGACACTCAATACGCAGCCGCAGTTCCACATACAAACAGCTATTAG 1644 0.4203 MRYLPFLSTTILPTSLFCLTTNSLFWKTIPNPSVPHCLYETTVSYSAYYLVFLPSSIERAMSTGDRQRMHEQSGCFDPNTMGESVTSLKDNFPQNPLPPSPMVVVGNTTNSNSFEENLKLSVDELSYNHHNPEDVSTYANGVTASSIDISHPQHLGLNMGNTFNNNNNNMDNHLVQEVIDALSYQHSTWDQESQDMAYANHTQQQQQPNEQQFQQSQSYNPSSILDPPYPSPDLLNLLHLPRCSASSLLTNPTPNFQNPMAFLGEFPIGSDNTSACASSVLYDPLFHLNLPPQPPALRELFQSLPRGYSLPTNSRNGSLFGGGDEMEPDDMGVLEFNRVTPSVAKGRGGKATKHFATEKQRREQLNGKYKILRSLIPNPTKIDRASVVGDAIDYIRELIRTVNELKLLVEKKRYGKERCKRPKTEEDAAESCNIKPFSDPDGGIRTSWLQRKSKDSEVDVRIIDDDVTIKLFQRKKINCLVFVSKVLDELQLELHHVAGGHVGEYCSFLFNSKIIEGSSVYASAIANRVIDVLDTQYAAAVPHTNSY 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01639 547 Pfam Helix-loop-helix DNA-binding domain 352 398 IPR011598 GO:0046983
Cca09g01639 547 Gene3D - 347 420 IPR036638 GO:0046983
Cca09g01639 547 SMART finulus 355 404 IPR011598 GO:0046983
Cca09g01639 547 PANTHER TRANSCRIPTION FACTOR BHLH91 69 546 - -
Cca09g01639 547 MobiDBLite consensus disorder prediction 199 227 - -
Cca09g01639 547 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 347 411 IPR036638 GO:0046983
Cca09g01639 547 CDD bHLH_AtMYC1_like 354 418 IPR045896 -
Cca09g01639 547 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 349 398 IPR011598 GO:0046983
Cca09g01639 547 MobiDBLite consensus disorder prediction 199 224 - -
Cca09g01639 547 PANTHER TRANSCRIPTION FACTOR BHLH91 69 546 IPR045895 GO:0006355|GO:0048658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01639 Cca-Chr9 40249510 40252135 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01639 74 547 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31220 39.181 6.39e-95 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca09g01639 HLH 8.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01639 - - gmx:100782512 778.859