Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01620 ATGGTGAAGTTCCTGAAGCCGAACAAGGCGGTGATCGTCCTGCAGGGGCGCTACGCAGGGCGCAAGGCGGTGATCGTGAGGACCTTCGACGACGGAACGAGGGAGCGCCCCTACGGCCACTGCCTGGTCGCCGGCATCAAGAAGTACCCGAGCAAGGTCATCAAGAAGGACTCTGCCAAGAAGACCGCGAAGAAGTCTAGGGTTAAGGCCTTCGTGAAGCTCGTGAACTACCAGCACCTCATGCCCACGCGCTACACGCTCGACGTCGATCTCAAGGACGCTGTTACTCCCGATGTTCTCGCTTCCAAGGACAAGAAGGTCACCGCTCTCAAGGAGACCAAGAAGCGCCTCGAGGAGAGGTTCAAGACTGGCAAGAACAGGCACAATTGGAAGTTGCTGTAA 402 0.5771 MVKFLKPNKAVIVLQGRYAGRKAVIVRTFDDGTRERPYGHCLVAGIKKYPSKVIKKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDAVTPDVLASKDKKVTALKETKKRLEERFKTGKNRHNWKLL 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01620 133 SUPERFAMILY Translation proteins SH3-like domain 2 113 IPR008991 -
Cca09g01620 133 Pfam KOW motif 7 32 IPR005824 -
Cca09g01620 133 CDD KOW_RPL27 6 88 IPR041991 -
Cca09g01620 133 PANTHER 60S RIBOSOMAL PROTEIN L27 1 129 IPR001141 GO:0003735|GO:0005840|GO:0006412
Cca09g01620 133 Pfam Ribosomal L27e protein family 52 127 IPR001141 GO:0003735|GO:0005840|GO:0006412
Cca09g01620 133 Gene3D - 1 133 IPR038655 -
Cca09g01620 133 SMART kow_9 4 31 IPR005824 -
Cca09g01620 133 Coils Coil 100 127 - -
Cca09g01620 133 PANTHER 60S RIBOSOMAL PROTEIN L27 1 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01620 Cca-Chr9 40048363 40050051 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01620 1 127 Cytoplasmic Ribosomal Protein Gene Family AT3G22230 82.677 2.53e-74 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01620 K02901 - gmx:100527246 239.195