Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01601 ATGGCCGACGAACCAATGCCCACGCGCTGGTCTTTCCAGGACTTTAAAGTGTATTATGATGCCAAGTTTGGTAGGAAGAAGGCCTTGGAGAATGGCGAGACTGGTGATAAAGCGGTCAGTAATGGAACTTCGTTATCCAATGGCAATCTGCATGCCAAGAGACCATCGGAAATGGCTGTTTATGAGCAGTTTCAAAGCGAGGGGCAGAATCAGACTCACACAAATGGTTTTTCGCCGGCCAATATGGATGAAAAGCCGCAGAAGTCTTTGCTTCCACCTTTTGAATCTGCAGATATGCGAACTTTAGCAGAGAGCTTAAGTAGGGATATCATTCGTGGAAGTCCAGATGTGAAGTGGGAAAGCATCAAGGGGTTAGAGAATGCTAAACGGTTACTGAAAGAGGCTGTTGTAATGCCAATTAAGTATCCCAAGTACTTCACTGGTCTGTTATCCCCATGGAAGGGCATCCTCCTTTTTGGCCCACCGGGGACAGGAAAGACAATGCTTGCAAAGGCAGTTGCGACAGAGTGCAAGACTACTTTTTTTAACATTTCAGCATCTTCGGTAGTCAGCAAGTGGCGAGGTGATTCAGAGAAGTTAGTGAAAGTGTTATTTGAACTTGCTAGGCATCATGCACCCTCAACAATATTTCTTGATGAAATTGATGCGATCATTAGTCAACGTGGTGAAGCTCGCAGCGAACATGAAGCAAGTAGACGTTTGAAAACTGAACTTCTCATTCAGATGGATGGTTTGACACGGTCAGATGAATTGGTTTTTGTTTTAGCGGCAACCAATCTTCCCTGGGAATTGGATGCAGCTATGCTCCGACGTCTTGAGAAGCGAATCCTTGTACCACTTCCAGAACCAGTAGCGAGAAGAGCGATGTTTGAGGAACTCCTTCCTCCACAGCCTGACAACGAACCGATTCCGTATGATTTATTGGTGGAACAGACAGAAGGATTTTCGGGGTCAGATATTCGGTTACTCTGTAAAGAGACAGCAATGCAGCCCTTAAGACGCTTAATGTCACAGCTTGAGCAGAGACAGGAGGAGGAGGTGGTTCCTGATGAAGAGTTGCCAACAGTTGGGCCAATCAGATCTGAAGATATAGAGATAGCTTTAAAAAACACAAGGCCGTCTGCACATCTCCATGCTCACAAATATGACAAGTTCAATGCTGATTATGGTAGTCAAATACTACAATGA 1209 0.4516 MADEPMPTRWSFQDFKVYYDAKFGRKKALENGETGDKAVSNGTSLSNGNLHAKRPSEMAVYEQFQSEGQNQTHTNGFSPANMDEKPQKSLLPPFESADMRTLAESLSRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTRSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPVARRAMFEELLPPQPDNEPIPYDLLVEQTEGFSGSDIRLLCKETAMQPLRRLMSQLEQRQEEEVVPDEELPTVGPIRSEDIEIALKNTRPSAHLHAHKYDKFNADYGSQILQ 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01601 402 CDD AAA 123 287 - -
Cca09g01601 402 MobiDBLite consensus disorder prediction 36 51 - -
Cca09g01601 402 MobiDBLite consensus disorder prediction 29 52 - -
Cca09g01601 402 Pfam ATPase family associated with various cellular activities (AAA) 156 286 IPR003959 GO:0005524|GO:0016887
Cca09g01601 402 PANTHER KATANIN P60 ATPASE-CONTAINING SUBUNIT A-LIKE 2 ISOFORM X1 9 400 - -
Cca09g01601 402 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 384 IPR027417 -
Cca09g01601 402 SMART AAA_5 152 289 IPR003593 -
Cca09g01601 402 Pfam AAA+ lid domain 313 353 IPR041569 -
Cca09g01601 402 PANTHER AAA DOMAIN-CONTAINING 9 400 - -
Cca09g01601 402 Gene3D - 115 392 IPR027417 -
Cca09g01601 402 Gene3D - 288 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01601 Cca-Chr9 39693091 39701341 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01601 150 361 Calmodulin-binding Proteins AT3G56690 36.279 4.55e-32 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01601 K07767 - gmx:100794098 711.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01601 09 39693091 39701341 Cca09g01601 09 39693091 39701341 ECH