Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01593 ATGGATTTGAGCGAAGAAGTTAGGGCTGCTCACAAGCGAGAATTCGCCGATTTCTTGGATCAAGATGTCGGAAAGGGCATTTACATGGACGAAATCAAAGCCCTAATCAACCACAAGCGCCACCGCCTCATCGTCAACATCTCCGATCTCCACAACTTCCGCGACTTGGGTAACAGGATTCTTAGGAGTCCTAGTGAGTTCATCCAACCGTTCTGCGATGCGGTCACGGATGCAACTCGAGCTACTGATCCCAACTATTTGAAGGAAGGGGAACAAGTGCTTGTGGGATTTGAAGGTCCTTTTGTTTCTCGCCGAGTCACGCCCAGGGATCTTCTCTCTGAATTCATAGGTTCTATGGTCTGTGTTGAAGGCATTGTCACCAAATGTTCTCTTGTCAGGCCGAAGGTTGTTAAAAGTGTTCATTTCTGCCCCACCACTGGAAACTTTACCAGTCGTGAATATCGAGATATTACATCCAATTTGGGGTTGCCCACAGGATCTGTTTACCCTACAAGGGATGAAAGTGGCAACTTACTTGTGACTGAGTATGGATTGTGCAAATACAAAGATCACCAAACTTTGTCCATTCAAGAAGTTCCTGAGAATTCTGCTCCTGGCCAACTCCCTAGAACAGTGGATGTCATTGTAGAAGATGACCTTGTTGATTCTTGCAAGCCTGGAGATCGAGTGGCAGTTGTGGGGGTATATAAAGCTCTTGCTGGGAAAACCAAAGGCAGTGTGAATGGAGTATTCAGGACTGTGCTCATAGCCAACAATGTTTCTCTTCTCAACAAAGAGGCTAATGCACCAAGCTACAGTATTGACGATCTCAAAAACATTAAAAAGATAGCTGAAAGAGATGATGCATTTGACCTACTAAGTAATTCACTTGCACCTTCTATATATGGGCATTCTTGGATAAAGAAAGCAGTGATTTTGTTGATGCTTAGTGGAGTGGAGAAGAATTTAAAGAATGGCACTCACTTGCGAGGCGACATTAACATGATGATGGTTGGCGATCCCTCTGTTGCCAAGTCTCAACTCTTACGAGCAATTATGAACATTGCTCCCTTGGCCATATCAACTACTGGCCGGGGTTCTTCTGGGGTTGGTTTGACAGCTGCAGTTACTTCGGATCAAGAAACAGGGGAAAGAAGGCTAGAAGCTGGGGCAATGGTTCTTGCTGACAGAGGTGTTGTCTGCATTGATGAATTTGACAAGATGAATGATCAAGATCGTGTCGCTATACATGAAGTTATGGAGCAGCAGACTGTTACTATAGCCAAAGCTGGTATCCATGCATCACTTAATGCTCGATGCAGTGTTGTTGCCGCTGCAAATCCTATATATGGAACTTATGATCGTTCATTGACTCCAACAAAAAATATTGGACTCCCAGACTCCTTGCTTTCTCGATTTGATCTACTGTTTATTGTGTTAGATCAAATGGATCCTGATATTGATCGTCGAATAACAGAACATGTCTTACGTATGCATCGATTTCGTTCTGCCGTTGATGGAGGTGAGGCAGCACTTGATGGGAGCTCAAGATATGGAAGGGAAGAGGAAGCTGATACGGACACATCTGTCTTCGTCAAATATAACAGAATGTTACATGGGAAGAAAGTTGAAAGAGGTCGCAAACGTGATACGCTCACAATTAAGTTTCTTAAAAAATATATCCACTATGCTAAGCATAGGATTCAACCTGAACTGACTGATGAGGCATCTGAGAGCATTGCCACAGCCTATGCTGAGCTCAGAAGTGCAAGCTCAAATGCAAAGACTGGAGGAACCCTCCCCATTACTGCCAGAACTTTAGAAACCATAATACGTCTCTCAACAGCCCATGCCAAATTGAAGTTGAGCAGACAGGTTTCAAAGTCTGATGTTGAAGCTGCTTTGAAAGTTCTTAATTTCGCAATATATCACAAAGAACTGACAGAAATGGAGGAACGTGAGAATGAGAGGGAGAGAGAGCAGGACAGGAAGCGTAAGGCTGAGCATAATGAAAATGATGGTCCTGACCGTGGTACGAAAGATAGAAGAGGGTCAACATCTGATGCCATGGAAGTAGATGATACTCCAGCAGCACAAACTGCTGATAGTCTCACCCCTGAAAGAATTGAAGCATTTAATTCTCTATTTGGTCAGCATATGCGTGCCAACCGCCTGGATCTCATATCTATTGCTGACGTAGAAGATGTTATCAACAGAGGGGCACATTCGCCTTACAGCGCTGCAGATATACTACTACTATTAGAGAGGTTGCAAGATGACAATAGAGTGATGATAGTTGATGGAATGGTGCATATGATATCATAG 2325 0.4378 MDLSEEVRAAHKREFADFLDQDVGKGIYMDEIKALINHKRHRLIVNISDLHNFRDLGNRILRSPSEFIQPFCDAVTDATRATDPNYLKEGEQVLVGFEGPFVSRRVTPRDLLSEFIGSMVCVEGIVTKCSLVRPKVVKSVHFCPTTGNFTSREYRDITSNLGLPTGSVYPTRDESGNLLVTEYGLCKYKDHQTLSIQEVPENSAPGQLPRTVDVIVEDDLVDSCKPGDRVAVVGVYKALAGKTKGSVNGVFRTVLIANNVSLLNKEANAPSYSIDDLKNIKKIAERDDAFDLLSNSLAPSIYGHSWIKKAVILLMLSGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRITEHVLRMHRFRSAVDGGEAALDGSSRYGREEEADTDTSVFVKYNRMLHGKKVERGRKRDTLTIKFLKKYIHYAKHRIQPELTDEASESIATAYAELRSASSNAKTGGTLPITARTLETIIRLSTAHAKLKLSRQVSKSDVEAALKVLNFAIYHKELTEMEERENEREREQDRKRKAEHNENDGPDRGTKDRRGSTSDAMEVDDTPAAQTADSLTPERIEAFNSLFGQHMRANRLDLISIADVEDVINRGAHSPYSAADILLLLERLQDDNRVMIVDGMVHMIS 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01593 774 SMART AAA_5 331 484 IPR003593 -
Cca09g01593 774 ProSitePatterns MCM family signature. 398 406 IPR018525 GO:0003677|GO:0005524|GO:0006260
Cca09g01593 774 SUPERFAMILY Nucleic acid-binding proteins 13 259 IPR012340 -
Cca09g01593 774 Pfam MCM OB domain 109 238 IPR033762 -
Cca09g01593 774 Coils Coil 643 670 - -
Cca09g01593 774 Pfam MCM P-loop domain 277 499 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cca09g01593 774 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 299 652 IPR027417 -
Cca09g01593 774 Gene3D - 135 189 - -
Cca09g01593 774 Gene3D - 271 664 IPR027417 -
Cca09g01593 774 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 3 766 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cca09g01593 774 Pfam MCM AAA-lid domain 556 639 IPR041562 -
Cca09g01593 774 Pfam MCM N-terminal domain 12 82 IPR027925 -
Cca09g01593 774 Gene3D - 109 239 IPR012340 -
Cca09g01593 774 Gene3D - 3 99 - -
Cca09g01593 774 PANTHER DNA HELICASE 3 766 - -
Cca09g01593 774 PRINTS Mini-chromosome maintenance (MCM) protein family signature 330 345 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cca09g01593 774 PRINTS Mini-chromosome maintenance (MCM) protein family signature 390 404 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cca09g01593 774 PRINTS Mini-chromosome maintenance (MCM) protein family signature 418 431 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cca09g01593 774 PRINTS Mini-chromosome maintenance (MCM) protein family signature 442 454 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cca09g01593 774 PRINTS Mini-chromosome maintenance (MCM) protein family signature 469 477 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cca09g01593 774 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 181 195 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Cca09g01593 774 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 207 219 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Cca09g01593 774 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 458 468 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Cca09g01593 774 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 491 501 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Cca09g01593 774 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 630 645 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Cca09g01593 774 ProSiteProfiles MCM family domain profile. 289 495 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cca09g01593 774 SMART mcm 104 643 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cca09g01593 774 CDD MCM3 292 641 - -
Cca09g01593 774 MobiDBLite consensus disorder prediction 649 704 - -
Cca09g01593 774 MobiDBLite consensus disorder prediction 649 689 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01593 Cca-Chr9 39545521 39551369 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01593 1 578 Core DNA Replication Machinery Family AT5G46280 80.690 0.0 966
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01593 K02541 - gmx:100811545 1370.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01593 09 39545521 39551369 Cca09g01593 09 39545521 39551369 ECH