LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca09g01593	ATGGATTTGAGCGAAGAAGTTAGGGCTGCTCACAAGCGAGAATTCGCCGATTTCTTGGATCAAGATGTCGGAAAGGGCATTTACATGGACGAAATCAAAGCCCTAATCAACCACAAGCGCCACCGCCTCATCGTCAACATCTCCGATCTCCACAACTTCCGCGACTTGGGTAACAGGATTCTTAGGAGTCCTAGTGAGTTCATCCAACCGTTCTGCGATGCGGTCACGGATGCAACTCGAGCTACTGATCCCAACTATTTGAAGGAAGGGGAACAAGTGCTTGTGGGATTTGAAGGTCCTTTTGTTTCTCGCCGAGTCACGCCCAGGGATCTTCTCTCTGAATTCATAGGTTCTATGGTCTGTGTTGAAGGCATTGTCACCAAATGTTCTCTTGTCAGGCCGAAGGTTGTTAAAAGTGTTCATTTCTGCCCCACCACTGGAAACTTTACCAGTCGTGAATATCGAGATATTACATCCAATTTGGGGTTGCCCACAGGATCTGTTTACCCTACAAGGGATGAAAGTGGCAACTTACTTGTGACTGAGTATGGATTGTGCAAATACAAAGATCACCAAACTTTGTCCATTCAAGAAGTTCCTGAGAATTCTGCTCCTGGCCAACTCCCTAGAACAGTGGATGTCATTGTAGAAGATGACCTTGTTGATTCTTGCAAGCCTGGAGATCGAGTGGCAGTTGTGGGGGTATATAAAGCTCTTGCTGGGAAAACCAAAGGCAGTGTGAATGGAGTATTCAGGACTGTGCTCATAGCCAACAATGTTTCTCTTCTCAACAAAGAGGCTAATGCACCAAGCTACAGTATTGACGATCTCAAAAACATTAAAAAGATAGCTGAAAGAGATGATGCATTTGACCTACTAAGTAATTCACTTGCACCTTCTATATATGGGCATTCTTGGATAAAGAAAGCAGTGATTTTGTTGATGCTTAGTGGAGTGGAGAAGAATTTAAAGAATGGCACTCACTTGCGAGGCGACATTAACATGATGATGGTTGGCGATCCCTCTGTTGCCAAGTCTCAACTCTTACGAGCAATTATGAACATTGCTCCCTTGGCCATATCAACTACTGGCCGGGGTTCTTCTGGGGTTGGTTTGACAGCTGCAGTTACTTCGGATCAAGAAACAGGGGAAAGAAGGCTAGAAGCTGGGGCAATGGTTCTTGCTGACAGAGGTGTTGTCTGCATTGATGAATTTGACAAGATGAATGATCAAGATCGTGTCGCTATACATGAAGTTATGGAGCAGCAGACTGTTACTATAGCCAAAGCTGGTATCCATGCATCACTTAATGCTCGATGCAGTGTTGTTGCCGCTGCAAATCCTATATATGGAACTTATGATCGTTCATTGACTCCAACAAAAAATATTGGACTCCCAGACTCCTTGCTTTCTCGATTTGATCTACTGTTTATTGTGTTAGATCAAATGGATCCTGATATTGATCGTCGAATAACAGAACATGTCTTACGTATGCATCGATTTCGTTCTGCCGTTGATGGAGGTGAGGCAGCACTTGATGGGAGCTCAAGATATGGAAGGGAAGAGGAAGCTGATACGGACACATCTGTCTTCGTCAAATATAACAGAATGTTACATGGGAAGAAAGTTGAAAGAGGTCGCAAACGTGATACGCTCACAATTAAGTTTCTTAAAAAATATATCCACTATGCTAAGCATAGGATTCAACCTGAACTGACTGATGAGGCATCTGAGAGCATTGCCACAGCCTATGCTGAGCTCAGAAGTGCAAGCTCAAATGCAAAGACTGGAGGAACCCTCCCCATTACTGCCAGAACTTTAGAAACCATAATACGTCTCTCAACAGCCCATGCCAAATTGAAGTTGAGCAGACAGGTTTCAAAGTCTGATGTTGAAGCTGCTTTGAAAGTTCTTAATTTCGCAATATATCACAAAGAACTGACAGAAATGGAGGAACGTGAGAATGAGAGGGAGAGAGAGCAGGACAGGAAGCGTAAGGCTGAGCATAATGAAAATGATGGTCCTGACCGTGGTACGAAAGATAGAAGAGGGTCAACATCTGATGCCATGGAAGTAGATGATACTCCAGCAGCACAAACTGCTGATAGTCTCACCCCTGAAAGAATTGAAGCATTTAATTCTCTATTTGGTCAGCATATGCGTGCCAACCGCCTGGATCTCATATCTATTGCTGACGTAGAAGATGTTATCAACAGAGGGGCACATTCGCCTTACAGCGCTGCAGATATACTACTACTATTAGAGAGGTTGCAAGATGACAATAGAGTGATGATAGTTGATGGAATGGTGCATATGATATCATAG	2325	0.4378	MDLSEEVRAAHKREFADFLDQDVGKGIYMDEIKALINHKRHRLIVNISDLHNFRDLGNRILRSPSEFIQPFCDAVTDATRATDPNYLKEGEQVLVGFEGPFVSRRVTPRDLLSEFIGSMVCVEGIVTKCSLVRPKVVKSVHFCPTTGNFTSREYRDITSNLGLPTGSVYPTRDESGNLLVTEYGLCKYKDHQTLSIQEVPENSAPGQLPRTVDVIVEDDLVDSCKPGDRVAVVGVYKALAGKTKGSVNGVFRTVLIANNVSLLNKEANAPSYSIDDLKNIKKIAERDDAFDLLSNSLAPSIYGHSWIKKAVILLMLSGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRITEHVLRMHRFRSAVDGGEAALDGSSRYGREEEADTDTSVFVKYNRMLHGKKVERGRKRDTLTIKFLKKYIHYAKHRIQPELTDEASESIATAYAELRSASSNAKTGGTLPITARTLETIIRLSTAHAKLKLSRQVSKSDVEAALKVLNFAIYHKELTEMEERENEREREQDRKRKAEHNENDGPDRGTKDRRGSTSDAMEVDDTPAAQTADSLTPERIEAFNSLFGQHMRANRLDLISIADVEDVINRGAHSPYSAADILLLLERLQDDNRVMIVDGMVHMIS	774

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca09g01593	774	SMART	AAA_5	331	484	IPR003593	-
	Cca09g01593	774	ProSitePatterns	MCM family signature.	398	406	IPR018525	GO:0003677\|GO:0005524\|GO:0006260
	Cca09g01593	774	SUPERFAMILY	Nucleic acid-binding proteins	13	259	IPR012340	-
	Cca09g01593	774	Pfam	MCM OB domain	109	238	IPR033762	-
	Cca09g01593	774	Coils	Coil	643	670	-	-
	Cca09g01593	774	Pfam	MCM P-loop domain	277	499	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Cca09g01593	774	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	299	652	IPR027417	-
	Cca09g01593	774	Gene3D	-	135	189	-	-
	Cca09g01593	774	Gene3D	-	271	664	IPR027417	-
	Cca09g01593	774	PANTHER	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	3	766	IPR031327	GO:0003677\|GO:0005524\|GO:0032508

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca09g01593	Cca-Chr9	39545521	39551369	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca09g01593	1	578	Core DNA Replication Machinery Family	AT5G46280	80.690	0.0	966

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca09g01593	K02541		-	gmx:100811545	1370.53

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca09g01593	09	39545521	39551369	Cca09g01593	09	39545521	39551369	ECH

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