Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01589 ATGGATGGGAGAGAGATGAAAGGAAAACAAAAGCGAGAGAATAAGAAGGTTAAGAGTAACAGAGATCTTCTCATTACTTTTTCAAAGAGAAAATATGGTATTCATAAGAAAGCTAGTGAGTTATCAACACTTTGTGGGGCAAAAGTTGATATACTCATGTTTACTTCATCTGGAAATTGGTTTAGTTACGGGGAACCTTCTCACCAAGCAATGGCAAGGTCTAGTGATGAAGAAAGTCCCATAGAACTCGTGGAGGTTCACACCAAATCAGAGATTAATGAACTCAATGCCAAAAATAATGCACTTATGAGTCAAATATACTATGAGAAAAAACGAGAGGATGAACTTGATGCGATTTTGAAGACAAAAAATCCACGTGGTTGGTGGGAACCCAAAATACAAGATCTTAGTCGTGAACAAGCCATGGAGACGGAGGCATCTTTTGTGGAATTCAAAAAGAAATTGGAAAATGAACTTTCTATCAAGCATAGAGAGAAAGAAAATAATGCTTCTCAAGTGAATGGAATCAGTTCATGCCTCAGTTGCACAAGTGGGAGTGACATATCTGAAGTTGTCTTTGGTGTTAGAAATGAAGCTTGTGGAATTGGTGCAAGTGAAAGTATTTTGCCTGATATTTCTTTAATTAGTCCCACAAATGAAGAGCAAAAATTCAACTTTTTTCCATATGGTGAACGTAGGGAAGATCTATTTGATATTGTTTATCCTCCTAAAAAACAAGTTCGTGGAGACAACTTTTTTGTTGATGATTCAAATGGAAGTAGCAATCATACCCTTGTCTTCTCTTCAAATCAATCCGAAGAAGATAATCCATTTCTACCCGATGGAAATAATAAGACTACGGATAATGAGATTTCTAGTGAAAGTGGTAGTGATGCTCCTTTTGCCTCACTCCAGTTGAATCAACACCAAGAGGCTAATTCATCTATATACATTGAAAATGAGCAGATTGGGGAAGCGAAACTGTATCACGTTTTGTTGGTGCTGTGA 1008 0.37 MDGREMKGKQKRENKKVKSNRDLLITFSKRKYGIHKKASELSTLCGAKVDILMFTSSGNWFSYGEPSHQAMARSSDEESPIELVEVHTKSEINELNAKNNALMSQIYYEKKREDELDAILKTKNPRGWWEPKIQDLSREQAMETEASFVEFKKKLENELSIKHREKENNASQVNGISSCLSCTSGSDISEVVFGVRNEACGIGASESILPDISLISPTNEEQKFNFFPYGERREDLFDIVYPPKKQVRGDNFFVDDSNGSSNHTLVFSSNQSEEDNPFLPDGNNKTTDNEISSESGSDAPFASLQLNQHQEANSSIYIENEQIGEAKLYHVLLVL 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01589 335 PRINTS MADS domain signature 29 44 IPR002100 GO:0003677|GO:0046983
Cca09g01589 335 PRINTS MADS domain signature 9 29 IPR002100 GO:0003677|GO:0046983
Cca09g01589 335 PRINTS MADS domain signature 44 65 IPR002100 GO:0003677|GO:0046983
Cca09g01589 335 SMART madsneu2 7 66 IPR002100 GO:0003677|GO:0046983
Cca09g01589 335 ProSiteProfiles MADS-box domain profile. 7 67 IPR002100 GO:0003677|GO:0046983
Cca09g01589 335 PANTHER MADS BOX PROTEIN 6 170 - -
Cca09g01589 335 SUPERFAMILY SRF-like 7 82 IPR036879 GO:0003677|GO:0046983
Cca09g01589 335 PANTHER AGAMOUS-LIKE 58-RELATED 6 170 - -
Cca09g01589 335 MobiDBLite consensus disorder prediction 263 299 - -
Cca09g01589 335 Gene3D - 18 85 IPR036879 GO:0003677|GO:0046983
Cca09g01589 335 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 63 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01589 Cca-Chr9 39493591 39501386 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01589 4 216 Type I MADS-box Gene Family AT5G60440 31.982 6.07e-22 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Cca09g01589 SRF-TF 1.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01589 - K12412 ccaj:109813207 650.973