Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01585 ATGGCGAAAAAGGCAAAAGGGTCTCACTCTGCTTCTTCTCCATCGACCTCTGCCTCTTCCGGCAAACTAGTGTTGAGGATTAAATCAAACGAGGGAATCAAGAGATCAGTGCGGCAGACAAATTCAAGAAAGAAACTCATAGCAAAGCAAAAGAAGAAGAAACAGAAGATTGATGCCAAGAAACCAAAGAAACCTCCCACTGCTTTCTTCTACTTCTTGGAGGATTTTCGTAAAGAATTTCAAGAGCAGAATCCAGATGTAAAGTCAATGCGTGATATTGGCAAGGCATGTGGAGAGAAGTGGAAAACAATGACTTATGAGGAGAAGGTTCAATACTATGATATTGCAACAGAAAAGCGTGCAGAATTTGATAGAGCAGTTGCAGAATTTAACAAGAAAATGGAAAGTGGCGAGTTTGAAGAATCTGACGAGGAATCAGAGTTCGAAGAGTAA 453 0.4062 MAKKAKGSHSASSPSTSASSGKLVLRIKSNEGIKRSVRQTNSRKKLIAKQKKKKQKIDAKKPKKPPTAFFYFLEDFRKEFQEQNPDVKSMRDIGKACGEKWKTMTYEEKVQYYDIATEKRAEFDRAVAEFNKKMESGEFEESDEESEFEE 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01585 150 Pfam HMG (high mobility group) box 62 131 IPR009071 -
Cca09g01585 150 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 62 131 IPR009071 -
Cca09g01585 150 SUPERFAMILY HMG-box 48 138 IPR036910 -
Cca09g01585 150 CDD HMGB-UBF_HMG-box 62 128 - -
Cca09g01585 150 MobiDBLite consensus disorder prediction 8 24 - -
Cca09g01585 150 MobiDBLite consensus disorder prediction 1 63 - -
Cca09g01585 150 PANTHER HIGH MOBILITY GROUP B PROTEIN 14 1 149 - -
Cca09g01585 150 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 1 149 - -
Cca09g01585 150 SMART hmgende2 61 132 IPR009071 -
Cca09g01585 150 MobiDBLite consensus disorder prediction 39 60 - -
Cca09g01585 150 Gene3D High mobility group box domain 46 147 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01585 Cca-Chr9 39469957 39474417 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Cca09g01585 HMG_box 6.1e-18 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01585 - - gmx:100809401 190.274