Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01579 ATGTTGTTGTCCCTAAAGATTAGTTTGACTATAGTCACAGTCCTTTCCATTGTATACATAGTTTCCCATGCTGAAACAAGCTTGGATGTTGAAATTGAAGCTTTGAAAGCTTTTAAGAACTCCATCACTGGTGACCCAGATGGGGCTCTTGCAGATTGGGTTGACAGTCACCACCACTGCAACTGGTCTGGCATTGCATGTGATACATCATCAAATCATGTCATTTCAATTTCCTTGGTTAGTGTTCAGCTCCAAGGGCAGATTTCACCATTCCTAGGAAACCTTTCAGGCCTTCGGGTTCTTGATTTAACTTCAAACTCATTCACTGGGCATATTCCTGCTCAGCTCAGTCTTTGCACTCAACTTACTCAGCTGATTCTTTTTGAAAATTCTCTCTCAGGTCCTATCCCTCCTGAATTAGGTAACCTTAAAAGCCTGCAGTATTTGGATTTAGGTAGCAACTTTTTGAATGGAAGCCTCCCTGACAGCATATTCAACTGCACTTCTTTGTTGGGTATTGCTTTTAATTTCAACAATCTTACTGGTAGAATCCCATCAAACATTGGGAATCTAGTTAACCTTATACAGATTGCAGGTTTTGGAAATAACTTGGTAGGGTCTATACCTCTTTCCATAGGTCACTTGGAAGCTTTGAGATCTCTTGATTTTAGTCAAAACAAGTTATCAGGTGTAATACCTCGAGAGATTGGAAATCTGACAAATTTAGAGTACCTTGAATTGTTCCAAAATTCCTTGAGTGGGAAAATCACTTCCGAGCTTGCTAAGTGTGGCAAACTTTTAAACCTCGAGTTATCTGAAAATCAGTTAACTGGGAGTATTCCTCCTGAGCTTGGAAATTTAGTTCAGCTGGAAAACTTGAAGTTACATCGCAATAACTTGAATTCCACCATCCCATCTTCCATTTTCCGGTTGAAATCATTGACACATTTAGGACTCTCACAGAATAACTTAGAGGGAATAATATCTTCTGAGATTGGATCTTTAAATTCCTTGCAAGTTCTGACCTTGCATTTAAATAAGTTTACTGGGAAGATCCCTTCATCAATAACAAACCTGACAAACTTGACATATCTGTCAATGAGCCAGAACCTCCTTTCAGGTGAACTTCCTTCAAACCTGGGTGTGCTTCATAGTTTGAAGTTTCTTGTTTTGAACTCCAACTACTTTCATGGATCCATTCCCCCTAGCATTACCAATTGTACAAGTCTAGTAAATGTAAGTTTGTCTTTTAATGCTTTAACTGGGAAAATTCCTGTGGGTTTTTCAAGGTCGCCTAATCTTACTTTCCTGTCTCTTGCATCCAACAAAATGACTGGGGAAATCCCAGATGACCTTTATAACTGCACAAATCTCAGCAGTCTAAGTTTGGCAGAGAACAACTTCAGTGGATTAATAAAATCAGGTATCCAGAACCTGTCTAAACTCCTACGCCTGCAGCTGAATGCAAATTCTTTCATAGGACCAATTCCACCAGAGATTGGAAACTTGAATCAACTCATCACTTTATCCCTTTCTGAAAATAAGTTTTCAGGTCAAATTCCTCCAGAACTATTCAAACTTTCTAACCTTCAGGGGCTCAGTCTATATGACAATGCATTAGAAGGTACAATACCTGATGAACTCTTTGAATTGGAAGAACTAACCAAACTTTTGCTGCATCAAAACAAGTTGGTTGGTCAAATACCTGATTCTATCTCAAAGCTTAAGATGCTTTCATACTTAGACCTTCATGGCAACAGACTTAATGGGTCCATTCCAAGAAGCATGGGGCAGCTTAATCAGCTTTTAGTTTTGGATCTTTCTCACAACCTCCTAACAGGACCAATTCCCGGGGATGTCACTGCACATTTCAAAGACATGCAGATGTATCTTAACCTTTCTTACAACCACTTGGTTGGAAATGTTCCAACTGAGTTGGGCATGTTGGAAATGATACAAGCTATTGATATTTCAAACAACAATCTTTCAGGTTTCATTCCCAAAACACTTGCTGGGTGCAGAAATCTGTTCAATCTTGATTTTTCAGGAAACAATATTTCAGGTCCTATTCCTGCAGAAGCTTTTAGTCGCATGGACTTGCTTGAAAGCTTAAACCTCTCAAGAAATCATTTAGAAGGAGAAATCCCAGAAATATTGGCAGAACTTGATCATCTTAGTTCCTTAGATCTTTCTCAGAATAACTTGAAGGGAACTATTCCTAAGGGCTTTGCCAACCTTTCCAACTTGGTGCACCTCAATCTTTCCTTCAATCAACTTGAGGGTCCTGTACCTAAGACCGGAATATTTGCAGACATCAATGCATCTAATATGATAGGAAACCAGGATCTTTGTGGAGCAAAGTTCCTATCACCATGCAGAGAGACAAAGCATTCACTATCCAAGAAGGGCATATCTATTATTGCTGCACTTGGATCTCTTGCTATACTTCTATTTCTGGTGCTAGTGATTCTAATTCACAATCGAGGCATCAAACTCTGCAATTCTAGAGAAAGAGATATTAGCGCCAATCATGGACCAGACTATTGTTCAGCATTGGCACTTAAAAGGTTCGAACCAGAGGACTTGGAAAATGCCACTGGTTTTTTCAGCACAGATAGCATCATTGGTGCTAGCAGTTTAAGCACAGTTTACAAGGGTCAAATGAAAGATGGCCAGGTTGTAGCTATAAAAAGATTGAATTTGCAACATTTCTCAGCAAATACTGACAAGATCTTCAAGAGAGAAGCCAATACCTTGAGCCATATGAGACATAGGAATTTGGTCAAGGTACTTGGATATGTCTGGGAGAGTGGGAAAATGAAGGCTTTGGTTCTAGAGTACATGGAGAATGGGAACTTAGATAGCATCATACACAGCAAGGGAGTAGATCAATCTGTGATCTCTAGGTGGACCTTAACTGAAAGAGTCCGAGTTTTCATTTCTATAGCTAGTGCATTGGATTATTTGCATTCTGGTATTGATTTTCCCATTGTACACTGTGATTTAAAGCCTTCTAACATCCTTTTAGATAGAGAATGGGAAGCTCATGTCAGTGACTTCGGGACAGCTAGAATACTTGGTCTTCATCTGCAGGATGGCAGTACCCTTTCCTCATCAGCAGCTTTGCAAGGCACAGTTGGCTACATGGCACCAGAATTTGCCTACATGAGGAAGGTCACGACTAAGGCGGACGTGTTCAGCTTTGGTATCATAGTAATGGAGTTTCTAACAAAAAGAAGGCCTACAGGACTCTCGGAAGAGGATGGTTTGCCCATCACTTTGCGTGAAGTAGTTACAAAAGCCCTTGCAAATGGAATAGAACCACTTGCCGATATTGTGGACCCTCTATTGGCTTGGAATGTTACAAAAGACCATGATATAGTATTGGTAGATCTCTTCAAACTATCCTTGTGCTGCACCCTCCCTGATCCTGAACATCGACCCAATATGAACGAGGTGTTATCTGCCCTTGTGAAGCTTCAAACAACACTATCTTGTTAA 3501 0.4007 MLLSLKISLTIVTVLSIVYIVSHAETSLDVEIEALKAFKNSITGDPDGALADWVDSHHHCNWSGIACDTSSNHVISISLVSVQLQGQISPFLGNLSGLRVLDLTSNSFTGHIPAQLSLCTQLTQLILFENSLSGPIPPELGNLKSLQYLDLGSNFLNGSLPDSIFNCTSLLGIAFNFNNLTGRIPSNIGNLVNLIQIAGFGNNLVGSIPLSIGHLEALRSLDFSQNKLSGVIPREIGNLTNLEYLELFQNSLSGKITSELAKCGKLLNLELSENQLTGSIPPELGNLVQLENLKLHRNNLNSTIPSSIFRLKSLTHLGLSQNNLEGIISSEIGSLNSLQVLTLHLNKFTGKIPSSITNLTNLTYLSMSQNLLSGELPSNLGVLHSLKFLVLNSNYFHGSIPPSITNCTSLVNVSLSFNALTGKIPVGFSRSPNLTFLSLASNKMTGEIPDDLYNCTNLSSLSLAENNFSGLIKSGIQNLSKLLRLQLNANSFIGPIPPEIGNLNQLITLSLSENKFSGQIPPELFKLSNLQGLSLYDNALEGTIPDELFELEELTKLLLHQNKLVGQIPDSISKLKMLSYLDLHGNRLNGSIPRSMGQLNQLLVLDLSHNLLTGPIPGDVTAHFKDMQMYLNLSYNHLVGNVPTELGMLEMIQAIDISNNNLSGFIPKTLAGCRNLFNLDFSGNNISGPIPAEAFSRMDLLESLNLSRNHLEGEIPEILAELDHLSSLDLSQNNLKGTIPKGFANLSNLVHLNLSFNQLEGPVPKTGIFADINASNMIGNQDLCGAKFLSPCRETKHSLSKKGISIIAALGSLAILLFLVLVILIHNRGIKLCNSRERDISANHGPDYCSALALKRFEPEDLENATGFFSTDSIIGASSLSTVYKGQMKDGQVVAIKRLNLQHFSANTDKIFKREANTLSHMRHRNLVKVLGYVWESGKMKALVLEYMENGNLDSIIHSKGVDQSVISRWTLTERVRVFISIASALDYLHSGIDFPIVHCDLKPSNILLDREWEAHVSDFGTARILGLHLQDGSTLSSSAALQGTVGYMAPEFAYMRKVTTKADVFSFGIIVMEFLTKRRPTGLSEEDGLPITLREVVTKALANGIEPLADIVDPLLAWNVTKDHDIVLVDLFKLSLCCTLPDPEHRPNMNEVLSALVKLQTTLSC 1166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01579 1166 SMART LRR_sd22_2 311 329 - -
Cca09g01579 1166 SMART LRR_sd22_2 239 262 - -
Cca09g01579 1166 SMART LRR_sd22_2 143 175 - -
Cca09g01579 1166 SMART LRR_sd22_2 527 548 - -
Cca09g01579 1166 SMART LRR_sd22_2 722 748 - -
Cca09g01579 1166 SMART LRR_sd22_2 215 233 - -
Cca09g01579 1166 SMART LRR_sd22_2 359 382 - -
Cca09g01579 1166 Gene3D Transferase(Phosphotransferase) domain 1 948 1165 - -
Cca09g01579 1166 Gene3D Ribonuclease Inhibitor 27 177 IPR032675 -
Cca09g01579 1166 Pfam Protein kinase domain 870 1154 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01579 1166 SUPERFAMILY Protein kinase-like (PK-like) 847 1161 IPR011009 -
Cca09g01579 1166 CDD STKc_IRAK 875 1160 - -
Cca09g01579 1166 Pfam Leucine rich repeat 553 612 IPR001611 GO:0005515
Cca09g01579 1166 Pfam Leucine rich repeat 289 347 IPR001611 GO:0005515
Cca09g01579 1166 Pfam Leucine rich repeat 653 711 IPR001611 GO:0005515
Cca09g01579 1166 Gene3D Ribonuclease Inhibitor 278 375 IPR032675 -
Cca09g01579 1166 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 110 164 - -
Cca09g01579 1166 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 4 116 - -
Cca09g01579 1166 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 289 372 - -
Cca09g01579 1166 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 367 1161 - -
Cca09g01579 1166 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 164 294 - -
Cca09g01579 1166 SMART LRR_typ_2 746 771 IPR003591 -
Cca09g01579 1166 SMART LRR_typ_2 722 745 IPR003591 -
Cca09g01579 1166 SMART LRR_typ_2 215 239 IPR003591 -
Cca09g01579 1166 SMART LRR_typ_2 575 599 IPR003591 -
Cca09g01579 1166 SMART LRR_typ_2 287 311 IPR003591 -
Cca09g01579 1166 SMART LRR_typ_2 527 551 IPR003591 -
Cca09g01579 1166 SMART LRR_typ_2 359 383 IPR003591 -
Cca09g01579 1166 SMART LRR_typ_2 479 503 IPR003591 -
Cca09g01579 1166 SMART LRR_typ_2 95 119 IPR003591 -
Cca09g01579 1166 SMART LRR_typ_2 143 167 IPR003591 -
Cca09g01579 1166 SMART LRR_typ_2 698 721 IPR003591 -
Cca09g01579 1166 PRINTS Leucine-rich repeat signature 725 738 - -
Cca09g01579 1166 PRINTS Leucine-rich repeat signature 746 759 - -
Cca09g01579 1166 SUPERFAMILY RNI-like 551 766 - -
Cca09g01579 1166 ProSiteProfiles Protein kinase domain profile. 869 1164 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01579 1166 Gene3D Phosphorylase Kinase; domain 1 835 947 - -
Cca09g01579 1166 Gene3D Ribonuclease Inhibitor 429 519 IPR032675 -
Cca09g01579 1166 Gene3D Ribonuclease Inhibitor 178 277 IPR032675 -
Cca09g01579 1166 SUPERFAMILY RNI-like 280 613 - -
Cca09g01579 1166 Gene3D Ribonuclease Inhibitor 628 800 IPR032675 -
Cca09g01579 1166 SUPERFAMILY L domain-like 31 301 - -
Cca09g01579 1166 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 110 164 - -
Cca09g01579 1166 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 4 116 - -
Cca09g01579 1166 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 164 294 - -
Cca09g01579 1166 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 367 1161 - -
Cca09g01579 1166 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 289 372 - -
Cca09g01579 1166 ProSitePatterns Serine/Threonine protein kinases active-site signature. 997 1009 IPR008271 GO:0004672|GO:0006468
Cca09g01579 1166 Gene3D Ribonuclease Inhibitor 376 428 IPR032675 -
Cca09g01579 1166 SMART serkin_6 869 1164 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01579 1166 Pfam Leucine rich repeat N-terminal domain 31 68 IPR013210 -
Cca09g01579 1166 Pfam Leucine Rich Repeat 145 167 IPR001611 GO:0005515
Cca09g01579 1166 Gene3D Ribonuclease Inhibitor 520 627 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01579 Cca-Chr9 39402919 39407378 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01579 5 1161 Receptor kinase-like Gene Family AT5G46330 53.602 0.0 1154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Cca09g01579 Pkinase 1.5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01579 K13420 - gmx:100817960 1998.4