Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01572 ATGTCTGTTGAACCTAAAGAACTTTACTACCAGGACCTTGTCCTAGACCACAACCAACAAGGCACAGGAGGATCCAATAGTAACACCATGTTCCAAAAGCACTTTTCCTCTTCCTTGATTCCTTCAGGTTCAACACCCTATGAGTCACAAGCCTTTGATCCCTCTTATTTGAGCTTCACCGAGTGTTTGCAAGGGGGCATGGACTACAATTCACTTGCAACATCTTTTGGCCTTTCTCCTTCTTCATCTGAGGTTTTTTCATCTGTTGAAGGCAACCAAAAGGTAGCAGCAACAGAAGGAGGAGATGTAGGTAGAGGTGGTGGTAGTGGTGCCAGTGAAACCCTTGCGACCCTTAACTCGTCTATCTCTTCTTCATCTTCTGAAGCTGGGGCTGAGGAAGATTCAGGAAAGAGCAAAAAAGATAGGCAAGTGAAAGCAGAAGATCAAGGAGGAGAAAACTCTAATAAGAAAGGgaacaaggataagaagaaaggagagaagaagcagaaggagCCAAGGTTTGCCTTCATGACCAAGAGTGAGGTTGATCACCTTGAAGATGGATACAGATGGAGAAAATATGGACAAAAAGCTGTCAAAAATAGCCCTTACCCGAGgagctactacaggtgcactacccagaagtgcacagtgaagaaacgcgtggagaggtcctttcaagacccaaccactgtgataacaacgtatgaaggtcagcacaaccatccGGTCCCCACATCGCTGAGAGGGAATGCGGGCGCAGGAATGTTCACACCTTCTTTGCTAGCCGCACCAACTCCACTCGCAGCCGGGTCAAACTTCCCTCAAGATCTCTTCCTTCACATGCATCACCATCATCACATTCACAACACTCTCTTCAACACACAATCAACAAACCctactactattactactactCCCTCCAACATTTACTCTTCACACCCCAGTAACATTGTTAACAACTCTCTTCTTCAAAACCAGTTTCTTCCTGATCAATATGGCCTCCTTCAAGACATAGTCCCTTCCATCTTCCACAACAAGACCCACCACAATTAA 1056 0.3807 MSVEPKELYYQDLVLDHNQQGTGGSNSNTMFQKHFSSSLIPSGSTPYESQAFDPSYLSFTECLQGGMDYNSLATSFGLSPSSSEVFSSVEGNQKVAATEGGDVGRGGGSGASETLATLNSSISSSSSEAGAEEDSGKSKKDRQVKAEDQGGENSNKKGNKDKKKGEKKQKEPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCTVKKRVERSFQDPTTVITTYEGQHNHPVPTSLRGNAGAGMFTPSLLAAPTPLAAGSNFPQDLFLHMHHHHHIHNTLFNTQSTNPTTITTTPSNIYSSHPSNIVNNSLLQNQFLPDQYGLLQDIVPSIFHNKTHHN 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01572 351 MobiDBLite consensus disorder prediction 132 176 - -
Cca09g01572 351 Pfam WRKY DNA -binding domain 186 243 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca09g01572 351 SUPERFAMILY WRKY DNA-binding domain 177 245 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca09g01572 351 SMART WRKY_cls 185 244 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca09g01572 351 ProSiteProfiles WRKY domain profile. 180 245 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca09g01572 351 MobiDBLite consensus disorder prediction 112 131 - -
Cca09g01572 351 MobiDBLite consensus disorder prediction 97 176 - -
Cca09g01572 351 PANTHER WRKY TRANSCRIPTION FACTOR 81 21 343 - -
Cca09g01572 351 Gene3D WRKY domain 156 246 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca09g01572 351 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 21 343 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01572 Cca-Chr9 39330753 39332787 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01572 51 344 WRKY Transcription Factor Family AT4G18170 48.505 7.02e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca09g01572 WRKY 1.5e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01572 - - gmx:100787050 474.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01572 09 39330753 39332787 Cca09g01572 09 39330753 39332787 ECH