Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01571 ATGGAGAAGGAGCCTCTGCTCCAATATTTCAGCCCTCGAAAGAAGCCTCCACCATTGCCACCACTATGCTCCTTGCCAGAAAACGATGAAATCGTTCTTCCAATGACCCCTTTGGAATTCAAGGACCGTCTCATCTTTGGTCCTGCTGCTCCTTCCCCTAGGGACCCTTCACCCTTGTCTGATGCCTTAACACTTCCCCATCATTCCCCAAAATGTtcctcttcctcctcctcctcACAGGACTATGCAGCACAAGTGTTTGATCAACAGCAACTTTCTTCTTGGCTCCTTGACCCCAATTATTCATTTAAAAAAACTAACCTTCATCGCTCCAAAACAGCACCAGCCATGGCTGTGATCAGCGATTTCAATCCCCAATCGGCTGTGTCAAGACCCAAATTCGGTAGCCAGAGTATTGTGCGCCAGGGTGTTGTTCTTCTTGTTCTTTATTTGGCATTAGGGGTTGTCATTTATTGGTTCAATAGGCATAATTTTACGGCTACTGAGACTCATCCTATAGTTGATGCATTGTATTTTTGTATAGTCACAATGTGCACGATAGGGTATGGTGACATCACACCTAATAGTACAGCCACTAAGCTTTTCTCTATATTGTTTGTGTTGGTGGGGTTTGGATTTATAGACATATTGTTGAGTGGGATGGTTAGCTATGTGCTTGATTTGCAGGAGAGTCACATGCTGAGGGCAGTGAAGGGGAGAGGTGAGAAGGATGGGAGGTCTTATATAATTGACGTGAAGAAAGGGAGGATGAGGATTCGGTTGAAGGTGGCGCTGGCTTTGGGGGTTGTGGTGCTTTGTATAGGAATAGGTGTTGGGGTTATGCATTTTGTGGAGAGGCTTGGATGGTTGGATTCCTTTTATCTTTCGGTTATGTCAGTTACGACAGTTGGGTATGGAGACCATGCTTTCAAGACCATGCACGGCCGGATCTTTGCTGCGATTTGGTTGCTTGTGTCAACACTTGCGGTGGCTCGAGCGTTTCTCTATTTGGCTGAGGCAAGAGTAGATAAACGGCATAGGATGATGGCAAAGTGGATTCTTGGTCAGGATATGACTGTTGCTGAGTTCCTTGCTGCAGACATTGACAACAATGGCTTTGTAAGtaaatcagaatacgttatatacaagcttaaggagatgggaaaagtatctgagaaggacatcatgcagTGGTGGATCACAGTTGATGGCAACTTTCTCATTTGGGGATTGGAGGGATATCAGATTCTCAAGATGCAAGCTGGTGATTCCCCACTACCCTTATGTCATGTTCATTAA 1299 0.4242 MEKEPLLQYFSPRKKPPPLPPLCSLPENDEIVLPMTPLEFKDRLIFGPAAPSPRDPSPLSDALTLPHHSPKCSSSSSSSQDYAAQVFDQQQLSSWLLDPNYSFKKTNLHRSKTAPAMAVISDFNPQSAVSRPKFGSQSIVRQGVVLLVLYLALGVVIYWFNRHNFTATETHPIVDALYFCIVTMCTIGYGDITPNSTATKLFSILFVLVGFGFIDILLSGMVSYVLDLQESHMLRAVKGRGEKDGRSYIIDVKKGRMRIRLKVALALGVVVLCIGIGVGVMHFVERLGWLDSFYLSVMSVTTVGYGDHAFKTMHGRIFAAIWLLVSTLAVARAFLYLAEARVDKRHRMMAKWILGQDMTVAEFLAADIDNNGFVSKSEYVIYKLKEMGKVSEKDIMQWWITVDGNFLIWGLEGYQILKMQAGDSPLPLCHVH 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01571 432 ProSitePatterns EF-hand calcium-binding domain. 367 379 IPR018247 -
Cca09g01571 432 SUPERFAMILY Voltage-gated potassium channels 253 360 - -
Cca09g01571 432 MobiDBLite consensus disorder prediction 46 77 - -
Cca09g01571 432 Pfam Ion channel 269 338 IPR013099 -
Cca09g01571 432 Pfam Ion channel 146 225 IPR013099 -
Cca09g01571 432 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 89 397 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cca09g01571 432 MobiDBLite consensus disorder prediction 1 21 - -
Cca09g01571 432 Gene3D - 248 356 - -
Cca09g01571 432 Gene3D - 138 238 - -
Cca09g01571 432 PRINTS Two pore domain K+ channel signature 301 310 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cca09g01571 432 PRINTS Two pore domain K+ channel signature 182 210 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cca09g01571 432 PANTHER TWO-PORE POTASSIUM CHANNEL 3 89 397 - -
Cca09g01571 432 SUPERFAMILY Voltage-gated potassium channels 139 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01571 Cca-Chr9 39279593 39287636 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01571 4 396 Ion Channels AT4G18160 65.926 8.49e-175 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01571 K05389 - gmx:100804249 642.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01571 09 39279593 39287636 Cca09g01571 09 39279593 39287636 ECH