Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01562 ATGCCTTCTACACGAGATTTCATCCATGGATATCACTTGATCCAAGGACTGATGAACCATGGAATGGAAGACTATATTTTTGCTCAACACAGGAATCTCAATGGTTATGACTTAGGGTTGTATGCAATATTTGATGGCCACTCCGGTCATGAAGTTGCAAAATACTTGCAAAGCCATCTATTTGAAAATATACTGAGTGAGCCTGATTTCTGGGAAAATCCGGTGTATGCTGTTAAGAAAGCATGTAAAGCAATAGATGATGAGATTTTAGAAAATATAGCTGATTCACGAGGAGGATCAACAGCTGTTGCAGCAATACTAATTAATGGAGTAAAGCTACTGGTAGCCAATGTTGGTGATTCTCGAGCAGTATCCTGCAAAAATGGTCGAGCAAAGCCACTTACTGTGGATCATGAACCAGAGAAGGAAAAAGATCTTATTGAGAGCAGAGGGGGTTTTGTGTCTAAGAAACCTGGGAATGTTCCAAGAGTGGATGGGCAATTAGCAATGACTCGAGCATTTGGAGATGGAAAACTGAAGGAGCACATTACGGCAGAACCAGATGTGACAATTCGAAATATTGATGACGACACTGAATTCATCATTTTGGCAAGTGATGGTCTGTGGAAGGTGATGACAAATCAGGAGGCTTGTGACTGTATCAGGGATGCAGATGATGCGCAGAAAGCATCTAAAAAGTTAATTAAAGAAGCTAAATCTATGGGAAGCTACGATGATATTTCATGCATAGTTATTATGTTCTAG 765 0.4013 MPSTRDFIHGYHLIQGLMNHGMEDYIFAQHRNLNGYDLGLYAIFDGHSGHEVAKYLQSHLFENILSEPDFWENPVYAVKKACKAIDDEILENIADSRGGSTAVAAILINGVKLLVANVGDSRAVSCKNGRAKPLTVDHEPEKEKDLIESRGGFVSKKPGNVPRVDGQLAMTRAFGDGKLKEHITAEPDVTIRNIDDDTEFIILASDGLWKVMTNQEACDCIRDADDAQKASKKLIKEAKSMGSYDDISCIVIMF 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01562 254 SMART PP2C_4 1 252 IPR001932 -
Cca09g01562 254 Gene3D - 8 254 IPR036457 -
Cca09g01562 254 PANTHER PROTEIN PHOSPHATASE 2C 28-RELATED 5 254 - -
Cca09g01562 254 PANTHER ALPHABET, ISOFORM E-RELATED 5 254 - -
Cca09g01562 254 CDD PP2Cc 7 252 IPR001932 -
Cca09g01562 254 SUPERFAMILY PP2C-like 7 254 IPR036457 -
Cca09g01562 254 Pfam Protein phosphatase 2C 21 247 IPR001932 -
Cca09g01562 254 ProSiteProfiles PPM-type phosphatase domain profile. 8 254 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01562 Cca-Chr9 39172773 39177954 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01562 5 254 PP2C-type Phosphatase Gene Family AT3G15260 60.159 8.25e-106 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01562 - - gmx:100814772 489.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01562 09 39172773 39177954 Cca09g01562 09 39172773 39177954 ECH