Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01559 ATGCGCAATCTGCGTCACCGAAATCTTACTAAGATCATTGGTAGTTGTTCAAATGCTGATTACAAGCTTTTAGTAATGGACTTCATGTCCAATGGGAACCTTGAAAAATGGTTGTATTCTCATAACTATTGTTTAGACTTCTTGCAAAGGCTAAATATAATGATAGATATGGCTTCTGCATTGGATTACATGCATCATGGTGCTTCGCCAACTGTGGTTCATTGCGATGTAAAACCTAGTAATGTCTTATTGGATGAAAACATGGTTGCTCATCTCAGTGACTTTGGCATTGCCAAACTTCTTGATGAAGGACAATCCCAAGAATATACTAAGACCATGGCAACATTTGGCTACATTGCACCAGAGTTTGGATCCAAGGGGACTATTTCTCCAAAAGGAGATGTATACAGTTTTGGGATTATGTTGATGGAAACATTCTCAAGAAAGAAGCCAACAGATGAGTTGTTTGTTGCAGGATTGAGCTTGAAAAGTTGGATTAGTGAATCATTACCCCATGCCATTACTCGAACTGTGGATTCCAATTTGTTACAGGATGAAGAACATCGTGCTGATGACATAATATCATCTATTTCATCTATTTATAGAATAGCCCTGAATTGCTGTGCAGATTTGCCTGAAGATCGAATGAATATGACTGATGTTGCTGCATCGTTAAGCAAAATCAAAGTCATGTTTCCGGAAAAGTACAGGCCAACACAAGCAAATACGATCTAA 735 0.3823 MRNLRHRNLTKIIGSCSNADYKLLVMDFMSNGNLEKWLYSHNYCLDFLQRLNIMIDMASALDYMHHGASPTVVHCDVKPSNVLLDENMVAHLSDFGIAKLLDEGQSQEYTKTMATFGYIAPEFGSKGTISPKGDVYSFGIMLMETFSRKKPTDELFVAGLSLKSWISESLPHAITRTVDSNLLQDEEHRADDIISSISSIYRIALNCCADLPEDRMNMTDVAASLSKIKVMFPEKYRPTQANTI 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01559 244 PANTHER RECEPTOR-LIKE PROTEIN 55 1 232 - -
Cca09g01559 244 ProSiteProfiles Protein kinase domain profile. 1 232 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01559 244 ProSitePatterns Serine/Threonine protein kinases active-site signature. 72 84 IPR008271 GO:0004672|GO:0006468
Cca09g01559 244 SMART serkin_6 1 232 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01559 244 Pfam Protein kinase domain 1 221 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01559 244 Gene3D Transferase(Phosphotransferase) domain 1 33 240 - -
Cca09g01559 244 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 1 232 - -
Cca09g01559 244 Gene3D Phosphorylase Kinase; domain 1 1 32 - -
Cca09g01559 244 SUPERFAMILY Protein kinase-like (PK-like) 1 235 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01559 Cca-Chr9 39157951 39158880 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01559 1 239 Receptor kinase-like Gene Family AT3G47570 37.209 4.52e-56 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Cca09g01559 Pkinase 7.7e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01559 - K13420 gmx:100784397 416.387