Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01539 ATGGTGAAAATCTCGGTTGGTGGATACGACGATGGGGAAGGACCCAGCAACCGCAACCAGAAGCGACGCAGGgaagaggaagaagaagaagaCCACCAACCGCAACAAAGCTTTGAAATCGTAGACCACCCTTCAATTGCAACACAAGAACACGAAGATCACCCTGCTCCACCCAATGATGGTGGATCCAACGCTAACACAAACGCCTCTGCAGCAACTAATGGCAGGGATAGGTCCATTCCCATCTTCGTTTCCGACCCTGATGTCCTCGATTGCTGCATTTGCTATGAACCCTTGAATGCCCCTGTCTTCCAGTGTGAGAATGGACATATTGCTTGCTCTAGTTGCTGTGTTAGACTCAGGAACAAGTGTCCCATGTGTTTAATGCCTATTGGATATAACCGTTGCCGAGCTATTGAGAAGGTGCTGGACTCTATCAAAATGTCATGCCCGAATGCAAATTATGGCTGCAAAGAGACATTTAGTTACAGCAGGAAAAACGACCACGAGAAGGAATGCATCTATCTACCATGTTTATGCCCACTTGCAGGTTGCGATTTTGTTGCCTCATCCAAGGAGTTATTCCTTCACTTCAGCCATAGACATGTGGGCTTTGGAACACAGTTTCAATATGATAAGTTTTTCACTGTCATCTTAAGTACCGACCAAAAAACAACTGTTCTTCAAGAGAAAAATGATGCTAATCTGTTTGTTGTTCACAATAACCATGAGCATCTTGGGAATGTAGTTCGCATTAGTTGCATTGGCCCCAAGTCCATGGCAGAGTTTCAGTATGAAGTTTTGGCTAGGTTTCGAGGAAGCACTCTAATATTGCAATCTTTTGCCAAGATCACTCAAGGCCAATTTGCTGATGCTCCTCCAAATGCGTTCCTTTTGATTCCGTCTGGTTTTTTTGGCTCTCGGCCACTGAAATTGGATATTCGCATAAAGTCACAACATTAA 963 0.4372 MVKISVGGYDDGEGPSNRNQKRRREEEEEEDHQPQQSFEIVDHPSIATQEHEDHPAPPNDGGSNANTNASAATNGRDRSIPIFVSDPDVLDCCICYEPLNAPVFQCENGHIACSSCCVRLRNKCPMCLMPIGYNRCRAIEKVLDSIKMSCPNANYGCKETFSYSRKNDHEKECIYLPCLCPLAGCDFVASSKELFLHFSHRHVGFGTQFQYDKFFTVILSTDQKTTVLQEKNDANLFVVHNNHEHLGNVVRISCIGPKSMAEFQYEVLARFRGSTLILQSFAKITQGQFADAPPNAFLLIPSGFFGSRPLKLDIRIKSQH 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01539 320 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 17 318 IPR044286 -
Cca09g01539 320 SUPERFAMILY TRAF domain-like 145 316 - -
Cca09g01539 320 MobiDBLite consensus disorder prediction 1 73 - -
Cca09g01539 320 CDD RING-HC_SIAHs 90 127 - -
Cca09g01539 320 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 17 318 - -
Cca09g01539 320 Pfam Seven in absentia protein family 135 267 IPR018121 GO:0005737|GO:0006511|GO:0007275
Cca09g01539 320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 198 IPR013083 -
Cca09g01539 320 ProSiteProfiles Zinc finger RING-type profile. 92 127 IPR001841 -
Cca09g01539 320 ProSiteProfiles Zinc finger SIAH-type profile. 145 203 IPR013010 GO:0008270
Cca09g01539 320 MobiDBLite consensus disorder prediction 15 37 - -
Cca09g01539 320 SUPERFAMILY RING/U-box 91 133 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01539 88 202 C3H Transcription Factor Family AT2G41980 37.607 1.01e-20 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01539 K04506 - gmx:100778869 528.094