LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca09g01532	ATGTGCAATATCCTTGGCACAATTATGGAGAATTATCAAGGTGATTTAAGCGATGTAATTCGTGCTAGTGGTGCATCATATGGCAGTTGCAGCACGGGAACTTCATCATCTGAAGCTGCTGCTCCCTTGACTCGTGATCATTACTGGCAGTTCTCTTCTGATCCCATGATTTTCTCTTCTGTTTTGGAAGACCCTAGTGGAAACTTTGGTGATCCATTCTCAAATACTAGAGATCCCTTTCTTCATGAGCTTCTTTTGCCTGGCTCTGCAGCCTACTTTAACAGCACAAGTTCTGCAGAAATCAGCAATTCTGGTAGTAGTAATTGCTGTGGTTTGGCACAAAAGATTCTTGAGGATGATATGAAGAGGCCTTGTAACAGCATATTGTCAAACATGATTCAGATCTCTCCCAATGAAAAGTTACCCATTTTGCCAGTGGTGGATGCTTCCTCAAGGGCACTCAAGCCTTCTGGTGTGGTTTCAGGTAATAACATGATTGATGCAACAAAAACCTCTAAAGATCATAGCTTGGTGGGCAACACAGAAGTGCAGATCTCATCTCCACGGAATCCAGGTCTTAAGAGAAGGAAGATCCAGGCAAAGAAGTCGATTTGTGTTCCTGCACCTGCAGCTACACCAAATAGCAGACAAAGTGGCGAGGTAGTTCCTTCTGATCTGTGGGCTTGGAGAAAATATGGCCAGAAACCCATTAAAGGTTCTCCGTATCCAAGGGGTTACTATAGATGCAGCAGCTCAAAGGGTTGCCCTGCAAGAAAACAAGTTGAGAGGAGTAGAACTGACCCAAACATGTTGGTCATTACTTACACCTCAGAGCACAACCATCCATGGCCAACTCAGAGAAATGCTTTCGCTGGTTCATCTCGATCACAACCTTCCAAGAACAACAACATTGCTGCTTCAAAGAATTCAGATGAGGAAGAGAGCAACAGTGACAGCAATAATGTAAACAACAGTGGTTCTGTAAAGGAAGAGAAGCAACTTGAGATGGATGATGAAGAATTTAGTGATATTGGAGTCCCTTACGAGCCAATATCTAATGTGAATAACCAACAACAACCTGATCAGGACTTATTTGCAGAATTGGAAAAAGTAGAAGCTCACTCACTAAACCTATTGTCTCCACAAGGTTTTGATGATCAGCAAAGGGAATCCAACGTTTTAGATTCATTCCATTTCTTTGACTGA	1206	0.4262	MCNILGTIMENYQGDLSDVIRASGASYGSCSTGTSSSEAAAPLTRDHYWQFSSDPMIFSSVLEDPSGNFGDPFSNTRDPFLHELLLPGSAAYFNSTSSAEISNSGSSNCCGLAQKILEDDMKRPCNSILSNMIQISPNEKLPILPVVDASSRALKPSGVVSGNNMIDATKTSKDHSLVGNTEVQISSPRNPGLKRRKIQAKKSICVPAPAATPNSRQSGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRTDPNMLVITYTSEHNHPWPTQRNAFAGSSRSQPSKNNNIAASKNSDEEESNSDSNNVNNSGSVKEEKQLEMDDEEFSDIGVPYEPISNVNNQQQPDQDLFAELEKVEAHSLNLLSPQGFDDQQRESNVLDSFHFFD	401

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca09g01532	401	MobiDBLite	consensus disorder prediction	240	360	-	-
	Cca09g01532	401	ProSiteProfiles	WRKY domain profile.	218	284	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Cca09g01532	401	PANTHER	WRKY TRANSCRIPTION FACTOR 14-RELATED	13	401	-	-
	Cca09g01532	401	Gene3D	WRKY domain	197	277	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Cca09g01532	401	SMART	WRKY_cls	223	283	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Cca09g01532	401	Pfam	WRKY DNA -binding domain	225	282	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Cca09g01532	401	PANTHER	WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED	13	401	IPR044810	GO:0003700
	Cca09g01532	401	MobiDBLite	consensus disorder prediction	267	329	-	-
	Cca09g01532	401	SUPERFAMILY	WRKY DNA-binding domain	221	284	IPR036576	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca09g01532	Cca-Chr9	38836013	38839812	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca09g01532	1	383	WRKY Transcription Factor Family	AT1G30650	43.961	3.53e-82	256

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Cca09g01532		WRKY	9.1e-26	CL0274