Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01532 ATGTGCAATATCCTTGGCACAATTATGGAGAATTATCAAGGTGATTTAAGCGATGTAATTCGTGCTAGTGGTGCATCATATGGCAGTTGCAGCACGGGAACTTCATCATCTGAAGCTGCTGCTCCCTTGACTCGTGATCATTACTGGCAGTTCTCTTCTGATCCCATGATTTTCTCTTCTGTTTTGGAAGACCCTAGTGGAAACTTTGGTGATCCATTCTCAAATACTAGAGATCCCTTTCTTCATGAGCTTCTTTTGCCTGGCTCTGCAGCCTACTTTAACAGCACAAGTTCTGCAGAAATCAGCAATTCTGGTAGTAGTAATTGCTGTGGTTTGGCACAAAAGATTCTTGAGGATGATATGAAGAGGCCTTGTAACAGCATATTGTCAAACATGATTCAGATCTCTCCCAATGAAAAGTTACCCATTTTGCCAGTGGTGGATGCTTCCTCAAGGGCACTCAAGCCTTCTGGTGTGGTTTCAGGTAATAACATGATTGATGCAACAAAAACCTCTAAAGATCATAGCTTGGTGGGCAACACAGAAGTGCAGATCTCATCTCCACGGAATCCAGGTCTTAAGAGAAGGAAGATCCAGGCAAAGAAGTCGATTTGTGTTCCTGCACCTGCAGCTACACCAAATAGCAGACAAAGTGGCGAGGTAGTTCCTTCTGATCTGTGGGCTTGGAGAAAATATGGCCAGAAACCCATTAAAGGTTCTCCGTATCCAAGGGGTTACTATAGATGCAGCAGCTCAAAGGGTTGCCCTGCAAGAAAACAAGTTGAGAGGAGTAGAACTGACCCAAACATGTTGGTCATTACTTACACCTCAGAGCACAACCATCCATGGCCAACTCAGAGAAATGCTTTCGCTGGTTCATCTCGATCACAACCTTCCAAGAACAACAACATTGCTGCTTCAAAGAATTCAGATGAGGAAGAGAGCAACAGTGACAGCAATAATGTAAACAACAGTGGTTCTGTAAAGGAAGAGAAGCAACTTGAGATGGATGATGAAGAATTTAGTGATATTGGAGTCCCTTACGAGCCAATATCTAATGTGAATAACCAACAACAACCTGATCAGGACTTATTTGCAGAATTGGAAAAAGTAGAAGCTCACTCACTAAACCTATTGTCTCCACAAGGTTTTGATGATCAGCAAAGGGAATCCAACGTTTTAGATTCATTCCATTTCTTTGACTGA 1206 0.4262 MCNILGTIMENYQGDLSDVIRASGASYGSCSTGTSSSEAAAPLTRDHYWQFSSDPMIFSSVLEDPSGNFGDPFSNTRDPFLHELLLPGSAAYFNSTSSAEISNSGSSNCCGLAQKILEDDMKRPCNSILSNMIQISPNEKLPILPVVDASSRALKPSGVVSGNNMIDATKTSKDHSLVGNTEVQISSPRNPGLKRRKIQAKKSICVPAPAATPNSRQSGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRTDPNMLVITYTSEHNHPWPTQRNAFAGSSRSQPSKNNNIAASKNSDEEESNSDSNNVNNSGSVKEEKQLEMDDEEFSDIGVPYEPISNVNNQQQPDQDLFAELEKVEAHSLNLLSPQGFDDQQRESNVLDSFHFFD 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01532 401 MobiDBLite consensus disorder prediction 240 360 - -
Cca09g01532 401 ProSiteProfiles WRKY domain profile. 218 284 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca09g01532 401 PANTHER WRKY TRANSCRIPTION FACTOR 14-RELATED 13 401 - -
Cca09g01532 401 Gene3D WRKY domain 197 277 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca09g01532 401 SMART WRKY_cls 223 283 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca09g01532 401 Pfam WRKY DNA -binding domain 225 282 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca09g01532 401 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 13 401 IPR044810 GO:0003700
Cca09g01532 401 MobiDBLite consensus disorder prediction 267 329 - -
Cca09g01532 401 SUPERFAMILY WRKY DNA-binding domain 221 284 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01532 Cca-Chr9 38836013 38839812 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01532 1 383 WRKY Transcription Factor Family AT1G30650 43.961 3.53e-82 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca09g01532 WRKY 9.1e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01532 - - gmx:102669548 563.533