Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01527 ATGGACTGGAGGCGCAGCAAGACGAAGAAGAACCATGCTCAGCCTCAGCCTCGGTTGCAGCGCCTCAACGCCAAAAAGGGCATCGATTACCAAcctccaccctctccgccttccccttcttcctccgcctccgcctcctccCTCTTCGACCACCAAACCAGCTTCCGCATCATGGGCGTCGACGGCGAATTCGACCGCATCTTCCAGACTTTGGGCCTCTCCGGCCCCGAAGACTTCTCCATCCCCACCGCCGACTGGGAGGCCCGCAAGGTCCGCGTCGCTTCCTCCACTCGGcccgctcccgctcccgagatcgtttccgtccccgctctcgactcccCTTGGTCTTCGGGGGAGCACGATGGAGGCAGGGGCGGTGTCGGCAGACTGAGGCACGGCGACCGGAGCGTGCTCTTCACTGATTCCGGTTCCTTCACTACTTCGCACGACGACGACAGTGACATCGGCGGCGAGAGGGCTTGTTCCGTTTCTAATgccgccgccgccgccgcTGATGAGTTGGTTTCTCCGTTTGGCTCCTCCAACGGCTGGTTCCGCCTGACTTTCTCCTCCTGGCAGAAGGGTGACGTGTTGGGAAGCGGCTCGTTCGGAACGGTGTACGAAGGCTTCACTGATGATGGATTCTTTTTTGCGGTAAAGGAGGTGTCTTTGCTCGATGAAGGTAGCCAGGGAAAACAGAGCATTTTCCAACTTCAGCAGGAAATATATCTTTTGAGTAAGTTTGAACATGAAAACATAGTTCGATATTATGGCTCGGACAAGGACAATAGTAAACTATATATCTTCCTTGAGCTTATGTCAAAAGGATCATTAGCAAGTCTCTACCAAAAGTATCGTTTAAATGACTCTCAAGTTTCTGCTTACACAAGGCAGATTTTAAATGGCTTGAAATATCTTCATGATCATGATGTGGTTCACAGGGATATCAAGTGTTCTAATATACTGGTGGATGTACATGGGGCAGTCAAGCTTGCAGATTTTGGGTTGGCAAAGGCAACAAAATTTAATGATGTTAAATCAAGCAAAGGCTCCCCATACTGGATGGCCCCTGAGGTTGTTAACTTAAAGAACCAAGGTTATGGGCTAGCAGCTGATATATGGAGCTTAGGGTGTACAGTTCTGGAGATGTTGACAAGGCAGCCTCCTTATTCTGATTTGGAAGGAATGCAAGCATTATTTCGGATTGGTAGGGGTCAACTTCCACCTATTCCTGAGTATTTATCCAAGGATGCCCAAGATTTCATTCTTCGATGCTTACAAGTTAACCCAAACAACCGCCCAACTGCAGCTCAGCTATCGGCTCATCCATTTCTAAGGAAAAAATTTCTACCTCCCTTAAGCTCTGCTTCTCCACATAGGAGCATCTATCGGTTATAG 1398 0.4478 MDWRRSKTKKNHAQPQPRLQRLNAKKGIDYQPPPSPPSPSSSASASSLFDHQTSFRIMGVDGEFDRIFQTLGLSGPEDFSIPTADWEARKVRVASSTRPAPAPEIVSVPALDSPWSSGEHDGGRGGVGRLRHGDRSVLFTDSGSFTTSHDDDSDIGGERACSVSNAAAAAADELVSPFGSSNGWFRLTFSSWQKGDVLGSGSFGTVYEGFTDDGFFFAVKEVSLLDEGSQGKQSIFQLQQEIYLLSKFEHENIVRYYGSDKDNSKLYIFLELMSKGSLASLYQKYRLNDSQVSAYTRQILNGLKYLHDHDVVHRDIKCSNILVDVHGAVKLADFGLAKATKFNDVKSSKGSPYWMAPEVVNLKNQGYGLAADIWSLGCTVLEMLTRQPPYSDLEGMQALFRIGRGQLPPIPEYLSKDAQDFILRCLQVNPNNRPTAAQLSAHPFLRKKFLPPLSSASPHRSIYRL 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01527 465 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 13 99 - -
Cca09g01527 465 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 153 448 - -
Cca09g01527 465 MobiDBLite consensus disorder prediction 1 47 - -
Cca09g01527 465 SUPERFAMILY Protein kinase-like (PK-like) 183 458 IPR011009 -
Cca09g01527 465 ProSitePatterns Protein kinases ATP-binding region signature. 198 220 IPR017441 GO:0005524
Cca09g01527 465 Pfam Protein kinase domain 193 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01527 465 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 153 448 - -
Cca09g01527 465 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 13 99 - -
Cca09g01527 465 SMART serkin_6 192 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01527 465 MobiDBLite consensus disorder prediction 107 129 - -
Cca09g01527 465 ProSiteProfiles Protein kinase domain profile. 192 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01527 465 Gene3D Transferase(Phosphotransferase) domain 1 190 460 - -
Cca09g01527 465 ProSitePatterns Serine/Threonine protein kinases active-site signature. 311 323 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01527 Cca-Chr9 38749568 38755939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01527 12 95 MAP Kinase Kinase Kinase AT4G08500 41.304 1.01e-08 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Cca09g01527 Pkinase 4.7e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01527 - K13414 gmx:100820552 723.391