LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca09g01526	ATGGGTAGGGGACGAGAAAAACCCTCAAAGATGGAAATTGATCTCTCTTTGAAGATTGATACTGATGATGAGCAAAAACAAGACATGGATGAGAGTGTGAAAGAGGATGAGGAGGAAGAGAAAATGACACAGATTCCAGATAATAATAATAAGGAAGAAGTCCCTGAGACCCCAACTGGTGAAATTGAAGACGATGCATCAGTGGTAGAAACATCTTTGCAAGATAACACAAAAACAAAAGAGTTAAATGTCCTACAAATGGAGATGGAGAGCATGAAAGAGGAAAACAAAGTTCTGAGGAAAGTGGTGGAACAAACAATGAAAGACTACTATGATCTGCAAATGAAATTTTCAGCCATCCAGGAAAACAATAAAAGAAAGGATCATGAAATCTCTCTCTCACTTCAAGACATTGCAACCAGCAGTGGTGAAGAGCCATCGAAAATTCTTGAGATCTTTAACAAAAAAATTATTCAAAGAGCTCCATCTCCTCCAAACACTGATGATAGTTTAAGTGAGAGTGAATTGGGTTTATCACTAAGGTTGCAACCAAGCACAAGTGAAAAAGAAAGTGATGTGGGAAATAATAAGGAAGAAAAGAAAGATGAACAATTGGCAAGTTTTGCATCATCAGTGCAGAACAAATTTCAGCGGACACATGAGTTGCCTGGTATTACAACACATGCTGCTTCCCCTCCTAACAGAAAGGCTAGGGTTTCGGTTAGAGCAAGATGTGAGGCTGCCACGATGAATGATGGGTGCCAATGGAGAAAATATGGGCAGAAAATTGCAAAAGGAAATCCATGTCCACGAGCTTATTATCGTTGCACTGTAGCTCCAGGGTGCCCCGTTAGGAAACAGGTGCAAAGATGTATAGATGACATGTCCATACTTATTACAACCTATGAAGGGACACATAACCATCCACTCCCTGTTGGTGCAACTGCTATGGCTTCTACAGCTTCTGCAGCAGCTTCCTTCATGTTGCTAGACTCAAGCAACCACATTTCAGATGGCACCTCAAGTTTCACTCAATTAGCACCCCTTCCTTACAACACCTTCCACCCCCTAAACCCTGCTTCAAACTTCAGGAGCATTAGCCCCAGTGACCCTTCCAAAGGGATTGTTCTTGATCTCACCAACAACCTCAGTGATCCACCACTACGTTTTTCAACTGGTGCTAGCTCCTCCAACCCTACAACTGAGCCTCGTTTTTCTTGGATGCCAAACAGATACCAAGGTGGTGGTGCCATTGCAATGAACAATTTTCATCACAAGGCTAGAGCAGTGGATCATGATAGAATTATTTGGAAAGCAGAAGAAAGCAATAATAAGGCAATAGATCACGACAATGTGTCCGCAATTGCCTCAGATCCTAAGTTTAGGGTTGCGGTTGCAGCAGCCATAACATCTCTCATGAATAAAGAGAGCCACACTACTCATCCTATAGGTACTTCGTTTGGTCCTAGGAGTGGATCACAAAATGGTAGCTAG	1494	0.4217	MGRGREKPSKMEIDLSLKIDTDDEQKQDMDESVKEDEEEEKMTQIPDNNNKEEVPETPTGEIEDDASVVETSLQDNTKTKELNVLQMEMESMKEENKVLRKVVEQTMKDYYDLQMKFSAIQENNKRKDHEISLSLQDIATSSGEEPSKILEIFNKKIIQRAPSPPNTDDSLSESELGLSLRLQPSTSEKESDVGNNKEEKKDEQLASFASSVQNKFQRTHELPGITTHAASPPNRKARVSVRARCEAATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCIDDMSILITTYEGTHNHPLPVGATAMASTASAAASFMLLDSSNHISDGTSSFTQLAPLPYNTFHPLNPASNFRSISPSDPSKGIVLDLTNNLSDPPLRFSTGASSSNPTTEPRFSWMPNRYQGGGAIAMNNFHHKARAVDHDRIIWKAEESNNKAIDHDNVSAIASDPKFRVAVAAAITSLMNKESHTTHPIGTSFGPRSGSQNGS	497

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca09g01526	497	SMART	WRKY_cls	250	310	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Cca09g01526	497	SUPERFAMILY	WRKY DNA-binding domain	243	311	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Cca09g01526	497	MobiDBLite	consensus disorder prediction	387	406	-	-
	Cca09g01526	497	MobiDBLite	consensus disorder prediction	160	211	-	-
	Cca09g01526	497	Pfam	WRKY DNA -binding domain	251	309	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Cca09g01526	497	MobiDBLite	consensus disorder prediction	1	28	-	-
	Cca09g01526	497	MobiDBLite	consensus disorder prediction	191	205	-	-
	Cca09g01526	497	Gene3D	WRKY domain	235	312	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Cca09g01526	497	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	12	482	IPR044810	GO:0003700
	Cca09g01526	497	Coils	Coil	82	109	-	-
	Cca09g01526	497	MobiDBLite	consensus disorder prediction	476	497	-	-
	Cca09g01526	497	PANTHER	WRKY TRANSCRIPTION FACTOR 9-RELATED	12	482	-	-
	Cca09g01526	497	MobiDBLite	consensus disorder prediction	160	190	-	-
	Cca09g01526	497	ProSiteProfiles	WRKY domain profile.	245	311	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Cca09g01526	497	MobiDBLite	consensus disorder prediction	1	66	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca09g01526	Cca-Chr9	38737773	38741251	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca09g01526	85	374	WRKY Transcription Factor Family	AT1G68150	50.836	1.19e-83	261

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Cca09g01526		WRKY	1.7e-24	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca09g01526	-		-	gmx:100820209	797.734