Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01510 ATGGTTGGAAGTTTTGATGTTTTAGCTCTTGATTCTAGCACTAATGGAACAATGAAACTTTTGCCTGAGGATTTCAATTCCATGGCGTTTATACGAGATCATGTGCCACTCATAGTTGGAGACAGTGGCATTGGCAATGGGGAGGTTCAGAATGGCACAGAAAATGGGGAAAGAAAGATAGTACTAGGAAGACATATTCATACCACAGGCCATGAAGTCACGGAGCCTGATATAGATGATGAGGTTACTGGGGAAAGGGAAGCATATATGGCAAGTGTGTTGGCCAGATACAAAAAATCTCTTTCAGAAAGGACCAACTATCACTTAGGTTACCCTTATAATTTGGATTTCGAGTATGGTGCACTAGCTCAACTTCAGCACTTTTCCATCAACAACCTTGGAGATCCGTTTATTGAAAGCAATTATGGTGTCCACTCGAGGCAGTTTGAGGTTGGTGTTTTGGACTGGTTTGCGCGGTTGTGGGAACTGGAGAAAGATGAGTACTGGGGCTATATAACAAATTGTGGCACAGAAGGCAATCTCCATGGCATCCTAGTTGGGAGAGAGGTCCTCCCAGATGGAATTTTATATGCCTCACAGGAGTCACATTATTCTGTTTTCAAAGCTGCACGTATGTACAGAATGGAATGTGTGAAGATTGACACTCTTTGTTCTGGTGAGATTGATTGTGATGATTTCAAGGCCAAGCTTCTTTGTCACAAGGACAAGCCAGCAATTGTCAATGTGAACATAGGTACAACTGTGAAAGGTGCTGTGGATGACCTTGATCTGGTTATAAAGAAACTTGGAGAAGCAGGATTTTCACATGACAGATTCTACATCCATTGTGATGGGGCTTTGTTTGGTCTCATGTTGCCTTTTGTCAAACGTGCTCCAAGAATTTCATTCAAGAAGCCTATAGGCAGTGTGAGTGTTTCTGGTCACAAATTCGTGGGGTGCCCCATGCCCTGTGGGGTGCAGATAACACGAGTGGAGCACGTGAAGGCCCTTTCGAGGAACGTGGAGTATCTGGCTTCAAGGGACGCCACAATCATGGGAAGCAGAAACGGGCACGCCCCCATATTCCTGTGGTACAGTTTGAACATGAAAGGGTACAGAGGGTTTCAAAAAGAGGTGAACAAGTGTTTGAGGAATGCACACTACTTGAAAGGTCGTCTTGTGGATGCTGGCATTGGAGCAATGCTCAACGAGCTCAGTAGCACCGTTGTGTTCGAGAGACCTCACGATGAGGAGTTCGTGCACAAGTGGCAGCTTGCATGCCAAGGGAACATTGCCCATGTTGTGGTCATGCCCAATGTCACCATCCACAAACTTGATCATTTTCTTCAGGAGCTTCTGCAGAAGCGTGCTGTGTGGTTTAGGGATGGTAAGGCTAGACCTTATTGTATAGCTTCCGATGTGGGACTCGCAAATTGTCTCTGTCCTCTGCATAGGTGA 1458 0.454 MVGSFDVLALDSSTNGTMKLLPEDFNSMAFIRDHVPLIVGDSGIGNGEVQNGTENGERKIVLGRHIHTTGHEVTEPDIDDEVTGEREAYMASVLARYKKSLSERTNYHLGYPYNLDFEYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKDEYWGYITNCGTEGNLHGILVGREVLPDGILYASQESHYSVFKAARMYRMECVKIDTLCSGEIDCDDFKAKLLCHKDKPAIVNVNIGTTVKGAVDDLDLVIKKLGEAGFSHDRFYIHCDGALFGLMLPFVKRAPRISFKKPIGSVSVSGHKFVGCPMPCGVQITRVEHVKALSRNVEYLASRDATIMGSRNGHAPIFLWYSLNMKGYRGFQKEVNKCLRNAHYLKGRLVDAGIGAMLNELSSTVVFERPHDEEFVHKWQLACQGNIAHVVVMPNVTIHKLDHFLQELLQKRAVWFRDGKARPYCIASDVGLANCLCPLHR 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01510 485 PANTHER - 1 485 - -
Cca09g01510 485 Pfam Pyridoxal-dependent decarboxylase conserved domain 195 402 IPR002129 GO:0016830|GO:0019752|GO:0030170
Cca09g01510 485 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 309 330 IPR021115 GO:0016831
Cca09g01510 485 Gene3D - 142 356 IPR015421 GO:0003824
Cca09g01510 485 SUPERFAMILY PLP-dependent transferases 73 454 IPR015424 -
Cca09g01510 485 Gene3D Aspartate Aminotransferase, domain 1 361 456 IPR015422 GO:0003824
Cca09g01510 485 PANTHER SERINE DECARBOXYLASE 1 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01510 Cca-Chr9 38474945 38478767 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01510 208 390 Calmodulin-binding Proteins AT1G65960 26.042 3.89e-08 53.5