Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01509 ATGGGCATTCGGCCAGACGAAAAAAAAATATGTACAACTGTGAAAGGTGCTGTGGATGACCTTGATCTGGTTATAAAGAAACTTGGAGAAGCAGGATTTTCACATGACAGATTCTACATCCATTGTGATGGGGCTTTGTTTGGTCTCATGTTGCCTTTTGTCAAACGTGCTCCAAGAATTTCATTCAAGAAGCCTATAGGCAGTGTGAGTGTTTCTGGTCACAAATTCGTGGGGTGCCCCATGCCCTGTGGGGTGCAGATAACACGAGTGGAGCACGTGAAGGCCCTTTCGAGGAACGTGGAGTATCTGGCTTCAAGGGACGCCACAATCATGGGAAGCAGAAACGGGCACGCCCCCATATTCCTGTGGTACAGTTTGAACATGAAAGGGTACAGAGGGTTTCAAAAAGAGGTGAACAAGTGTTTGAGGAATGCACACTACTTGAAAGGTCGTCTTGTGGATGCTGGCATTGGAGCAATGCTCAACGAGCTCAGTAGCACCGTTGTGTTCGAGAGACCTCACGATGAGGAGTTCGTGCACAAGTGGCAGCTTGCATGCCAAGGGAACATTGCCCATGTTGTGGTCATGCCCAATGTCACCATCCACAAACTTGATCATTTTCTTCAGGAGCTTCTGCAGAAGCGTGCTGTGTGGTTTAGGGATGGTAAGGCTAGACCTTATTGTATAGCTTCCGATGTGGGACTCGCAAATTGTCTCTGTCCTCTGCATAGGTGA 735 0.4803 MGIRPDEKKICTTVKGAVDDLDLVIKKLGEAGFSHDRFYIHCDGALFGLMLPFVKRAPRISFKKPIGSVSVSGHKFVGCPMPCGVQITRVEHVKALSRNVEYLASRDATIMGSRNGHAPIFLWYSLNMKGYRGFQKEVNKCLRNAHYLKGRLVDAGIGAMLNELSSTVVFERPHDEEFVHKWQLACQGNIAHVVVMPNVTIHKLDHFLQELLQKRAVWFRDGKARPYCIASDVGLANCLCPLHR 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01509 244 Pfam Pyridoxal-dependent decarboxylase conserved domain 12 162 IPR002129 GO:0016830|GO:0019752|GO:0030170
Cca09g01509 244 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 68 89 IPR021115 GO:0016831
Cca09g01509 244 PANTHER SERINE DECARBOXYLASE 9 244 - -
Cca09g01509 244 Gene3D - 9 153 IPR015421 GO:0003824
Cca09g01509 244 PANTHER - 9 244 - -
Cca09g01509 244 SUPERFAMILY PLP-dependent transferases 11 213 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01509 Cca-Chr9 38464366 38465901 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01509 6 149 Calmodulin-binding Proteins AT1G65960 27.673 6.01e-08 50.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01509 09 38464366 38465901 Cca08g02720 08 61561080 61565734 PCT