Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01505 ATGCATACCTCTTCAAGAGGGGTTACTAGATCCACCCCTACGCTCATGAGTCTAAAAGACGGTTTTCCTTCCGCGCGTTCATCCGCAAGACTCCTCCACCCTTCGCTTAAAATGTCTGATATGGATGAGTATCGTTGCTTTATTGGTGGCCTTGCATGGTCAACATCTGATAGAAAGTTAAAGGATACATTTGAAAAGTTTGGCAAGCTTGTTGAGGCAAAGGTGGTTGTTGACAAGTTCTCTGGGCGTTCTCGAGGTTTTGGATTTGTCACATTTGATGACAAGAAAGCAATGGAAGATGCTATTGATGCTATGAATGGGATGGATTTAGATGGGCGAACTATTACTGTTGATAGAGCTCAGCCTCAACAAGGATCAAGTAGAGATGACGGGGgtgatcgctaccgtgatcgtggtcgtgatcgtggccgtgatcgagattatggaggtggaGGTGGAGGTGGTCGAGGATCTAATGGTGGtgaatgctttaagtgtggaaaacctggtcattttgctagggaatgccctGGTGAAGGGTCCAGGGGGGGAAGGTATGGTGGTAGGGAAAATAGATATGGTGGAAGCAGCGGTGGTGGTCACTATGGTCCGGATAGAAATGCAGATCGTTCTTCAGGGGGACGCAACAGGGATGCTGGTAGTCATGGAGATTCTGGAAATGATCGATATTACCGTGATCGTGCAGGACCTTTAATCCTTTTATTGAGCTTTGAAATTGAAGAGGTCGCTTTTAATGCTTCAGCTTTCTTTTTCATTCGCACTTCACAATGCTCTGGACATCTGGGATTGTTGTTTGGATGGATCAATGATACCATCAAGCGGGATTCTTGGCTAAATGTGGTCTTTTTGGATTCATCATTGGGTTCTTTTGTTGCTAATTGGACATGCATGGGGGTTCCATTTTCTATGATTGTGGCACATTGTTTGGAAGATCTTGATGAGTTGAGCAACTACGATCCATTGCATTTTTTACGTTGTTGCTCTATTTGGTGGAAGATTGCTCTCATCGAACTTTTTACCTGCCTGCATGTGATGTTTTGTTTGCTGAGATCTGGTTTGTCTTACCATAAAGAGATAGTGAAACCCGCGTATGGTCCCAAATTTGAATTCTCTTCAATCACAAGGGTTGGGCTCACTAATATCAGATTTGACATTGCCGCCTTACTTAATCTTCGCACTATGATTATGAAAGGAAATTGA 1221 0.3964 MHTSSRGVTRSTPTLMSLKDGFPSARSSARLLHPSLKMSDMDEYRCFIGGLAWSTSDRKLKDTFEKFGKLVEAKVVVDKFSGRSRGFGFVTFDDKKAMEDAIDAMNGMDLDGRTITVDRAQPQQGSSRDDGGDRYRDRGRDRGRDRDYGGGGGGGRGSNGGECFKCGKPGHFARECPGEGSRGGRYGGRENRYGGSSGGGHYGPDRNADRSSGGRNRDAGSHGDSGNDRYYRDRAGPLILLLSFEIEEVAFNASAFFFIRTSQCSGHLGLLFGWINDTIKRDSWLNVVFLDSSLGSFVANWTCMGVPFSMIVAHCLEDLDELSNYDPLHFLRCCSIWWKIALIELFTCLHVMFCLLRSGLSYHKEIVKPAYGPKFEFSSITRVGLTNIRFDIAALLNLRTMIMKGN 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01505 406 Gene3D - 158 215 - -
Cca09g01505 406 MobiDBLite consensus disorder prediction 174 228 - -
Cca09g01505 406 MobiDBLite consensus disorder prediction 208 228 - -
Cca09g01505 406 SMART rrm1_1 45 118 IPR000504 GO:0003723
Cca09g01505 406 SUPERFAMILY Retrovirus zinc finger-like domains 145 181 IPR036875 GO:0003676|GO:0008270
Cca09g01505 406 SMART c2hcfinal6 162 178 IPR001878 GO:0003676|GO:0008270
Cca09g01505 406 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 47 116 IPR000504 GO:0003723
Cca09g01505 406 MobiDBLite consensus disorder prediction 129 149 - -
Cca09g01505 406 ProSiteProfiles Zinc finger CCHC-type profile. 163 177 IPR001878 GO:0003676|GO:0008270
Cca09g01505 406 Gene3D - 33 157 IPR012677 -
Cca09g01505 406 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 38 217 - -
Cca09g01505 406 SUPERFAMILY RNA-binding domain, RBD 38 154 IPR035979 GO:0003676
Cca09g01505 406 PANTHER TRANSFORMER-2-RELATED 38 217 - -
Cca09g01505 406 MobiDBLite consensus disorder prediction 113 161 - -
Cca09g01505 406 Pfam Zinc knuckle 162 177 IPR001878 GO:0003676|GO:0008270
Cca09g01505 406 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 122 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01505 Cca-Chr9 38431521 38436769 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01505 8 102 C2H2 Transcription Factor Family AT2G19380 34.021 1.45e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01505 - - gmx:100815224 286.96