Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01495 ATGGGAGATAACAACAATGTCAACCTCCCACCCGGGTTTCGCTTCTATCCCACGGATGAAGAGCTTGTAGTTCATTTCCTTCAAAGAAAGGCAAATCTTCTACCTTGCCACCCAGATGTCATCCCTGATCTTGAACTCTACCCTTATGACCCTTGGGAGCTTCATGGTAGAGCTTTGGCTGAGGGAAAGCAATGGTACTACTACAGCAGAAGAACACAAAATAGGGTCACTAGCAATGGCCATTGGATGCCGATGGGAATGGAAGAGCCAGTGATTACAAGCTCAAGCAACAAGAGAGTTGGCATGAAGAAATATTATGTGTTCCATGTGGGAGAAGCTCCTGATGCAGGTAACACAACCAATTGGATAATGCAAGAATATCGTCTATTAGATTCAGCTTCCTCTAGCAGATCATCCAGAAGAAGATCACAACCAAAACCGGATCATAGTAAATGGGTGATATGTCGAGTTTATGAGAGGgataacgatgatgatgatgatgatggggatgGAACAGAGCTCTCTTGTTTGGATGAAGTTTTCTTGTCATTGGATGATCTTGATGAAATAACCATTAATGTAGGACTCTTTAATCCTGCAAATGAAGATAAGATATGCAAAAGGGGTTCCTGCTTAGGGAAGCATCAAGTCATGTGTGATGCAAGCATTCGCATGCTTTAA 681 0.4082 MGDNNNVNLPPGFRFYPTDEELVVHFLQRKANLLPCHPDVIPDLELYPYDPWELHGRALAEGKQWYYYSRRTQNRVTSNGHWMPMGMEEPVITSSSNKRVGMKKYYVFHVGEAPDAGNTTNWIMQEYRLLDSASSSRSSRRRSQPKPDHSKWVICRVYERDNDDDDDDGDGTELSCLDEVFLSLDDLDEITINVGLFNPANEDKICKRGSCLGKHQVMCDASIRML 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01495 226 Gene3D NAC domain 18 165 IPR036093 GO:0003677|GO:0006355
Cca09g01495 226 ProSiteProfiles NAC domain profile. 9 160 IPR003441 GO:0003677|GO:0006355
Cca09g01495 226 PANTHER NAC DOMAIN-CONTAINING PROTEIN 104 6 191 - -
Cca09g01495 226 Pfam No apical meristem (NAM) protein 10 129 IPR003441 GO:0003677|GO:0006355
Cca09g01495 226 PANTHER NAC TRANSCRIPTION FACTOR 56 6 191 - -
Cca09g01495 226 SUPERFAMILY NAC domain 6 159 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01495 Cca-Chr9 38303404 38305202 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01495 7 162 NAC Transcription Factor Family AT1G52890 43.293 1.66e-38 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca09g01495 NAM 2.9e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01495 - - gmx:100788893 360.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01495 09 38303404 38305202 Cca08g02710 08 61497240 61498933 PCT