Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01493 ATGGAAACTAAGGAGGAGGAGGAGCAGCAGCGCGAGTGGGGCCTCTACGAAGCCTACAACGAGCTCCACGCGCTGGCCCAGGACCTCCACACGCCCTTCGACGCCCCCGCGGTTCTCGTCGTGGGCCACCAAACCGACGGCAAGAGCGCCCTCGTCGAGGCCCTAATGGGCTTTCAGTTCAACCACGTGGGCGGCGGCACCAAGACCCGCAGGCCCATCACCCTCCACATGAAATACGACCCACATTGCGACTCCCCTCTCTGCCACCTCGTCTCCGACACCGACCCCTCCCTCTCTCACCAAAAATCCCTCCCTCAAATCCAGGCATATATTGAAGCAGAAAACGCCAGGTTGGAGCAGGACACAAGCCAATTCTCCGCAAACGAAATCATCATCAAAGTCCAGTACAAGTACTGCCCCAACCTCACCATCATCGACACTCCCGGCCTCATCGCGCCCGCTCCCGGCCGCAAAAACAGGGCCCTCCAGGCCCAGGCCCGCGCCGTCGAGTCCCTGGTGCGGGCCAAGATGCAGCACAAGGAGTTCATCATTCTCTGCCTGGAGGATTGCAGCGACTGGAGCAACGCCACCACCAGGCGCGTCGTCATGCAGGTCGATCCCGAGTTGGCCAGGACTGTCATCGTCTCCACCAAGCTCGACACCAGGATTCCGCAGTTCGCGCGGCCTTCCGATGTTGAGGTTTTCCTTTCGCCGCCTCCGTCTACGCTCGACGGCTGCATTCTTGGGGATTCTCCCTTCTTCACGTCCGTGCCTTCTGGAAGAGTTGGTTCTGGAACTGGTTATCTCTATGCCTCCAATGATGAGTTTAAACAGGCAGTGTGCTTCAGGGAGATTGAAGATGTTGCATCTTTGGAGGAGAAGTTGGGCAGGGCTTTGTCAAAGCAGGAAAGGAGTAGGATAGGTGTGAGCAAGCTTCGGTTGTTTCTGGAAGAATTGCTGCAAAAGAGGTATATAAATAACGTACCATTGATCATTCCTCTTCTTGAGAAGGAGTACCGGAGTGTGACAAGGAAATTGAGTGATATAGATCTAGAATTGAGCACACTTGATGAGGCCAAACTGAAGGAGAAAGGAAGAGCCTTCCATGATATGTTCTTGACCAAGTTGTCTTTGTTGCTTAAAGGGACAGTTGTTGCGCCTCCTGATAAGTTTGGTGAAACACTGCAAGATGAGCGAATAAATGGAGGAGCATTTGTTGGTGCTGATAGTGTTCAATTCCCTCACAAGTTAATACCTAATGCAGGGATGCGTCTTTATGGTGGTGCACAATATCATAGGGCAATGGCTGAATTTCGTTTTGTGGTTGGAGGAATCAAGTGTCCCCCAATTACGCGGGAAGAAATTGTAAATGCTTGTGGAGTTGAAGACATTCATGATGGAACAAACTACTCTAGGACTGCTTGTGTAATTGCTGTTGCGAAGGCTCATGACACATTTGAACCTTTTCTTCATCAGTTGGGGTCCAGACTGTTGTATATACTTAAGAGATTACTTCCGATCTCTGTTTATCTTCTTCAGAAAGATAGTGAATATCTAAGTGGCCATGAGGTGTTCCTCAGGCGTGTTGCCTCTGCCTTCAACAACTTTGCAGAGTCTACTGAAAAATCATGCCGTGAAAAATGTATGGAGGACTTGGTAAGCACCACACGATATGTTTCATGGTCTCTCCACAATAAGAGTCGGGCTGGGTTACGTCAGTTCTTAGATTCATTTGGTGGAACAGAACATTCCAATGCTTGTAATAATCCTACAGCAACTGCTCTATCACAAACAAGTGCACATGAGAAAGAAGAAGCAAAGTCACAACCGGATGTAAAACTCAGCCATGTGGCCTCTGGCACTGATTCTAGTTCATCCATTCAGACAACAGAAACAAAGCTTGCTGACCTTCTGGATAGTACTCTCTGGAATAGGAGGCTTGCACCTTCATCTGAAAGGATAGTTTATGGCTTGGTACAACAGATATTTCATGGAATTAGAGAATATTTCTTGGTTTCCACAGAATTGAAGTTCAACTGTTTCCTTTTGATGCCCATTGTGGACAAGTTGCCTGCACTTCTCCGGGAAGACCTGGAATCTGCTTTTCAAGATGACCTGGATAATGTTTTTGACATGACCAATCTGCAGCACTCATTTGGGCAGCAAAAGAGAGATACAGAAATTGAACTGAAAAGGATCAAGAGGCTCAAAGAGAAATTCAGAATGATACACGAGCAGCTAATTGTAAATCGAGCCATCAGCTTCATCTTCTTCCGCCTTTCCGTTTTCCTCTATGCGGAAGAACCTACCGGACGCTGCAACCGCACTCAATCTCCATTTGAACAGGTAATGGAGAATGCGTGGAGCAACGGCAAGGTGAAGGTCCTGAAGCCGAGGACTTCGAACGAAAACGTTCCGCCGTTGCAGATCGACACGGACGACAAAAGAGGACGCTATCTCCAACCAAACACGATGAGTCCGCGGTATCAACCGTACGCCGCCGAGAACATCGACGTCGGCTCGCCGCTCGCGCGCTACCTCTTCGTCGGATCTCCTCTCTCCGGCAAGGTCGCCGGCGAGGCCTTCACTCCTCCGACGTTCGGCGCCAGCAAGTACAGGACCGCGAAAGCGCAGCAGTACTGCGGTTCGGGGAGCAGCAGCTTCGGTTCTCGCGGCAGGTTGTCGCCGTCGCCGCTTTCGTCGATTGAGAATTTGGAGATCGCGTCGCTCATGTCGCCGCCGATGTACAGAACGCAGGCGACGGGAGACGATGACGTGATTGTGATGGATGATATTCTGGTGAGGCCAGTGTCCGGTGGAAAGAGCGGAAGGTCTTCGTCTTCCTCCTGCCGCGGTTCGTCCTCTTCGACTTCGTCCACAGCGAGAAGCGTGTTCAAGACGGAAATTTGCAGAGCGTGGGAAGAGTCTGGAAACTGCCGCTACAACTCCAAATGCCAGTTTGGACCCCTGAAAGAAGAGTTTCGTTCCACGAAAAGCAAATCTGCGGAACAGGTAGTGCAATCATCTGTTGGAGCCGGATCAAGCACGCATGGTCCAAGCAGTCACATTGTTCATCAGCAGTCTACAGCAGCTGAATCTGATCATGCAGTCACAACATCCCGACCACCTTCTACAGCATCTGAAAGCAAATCTGGGGAACAGGTAGTGGAATCATCTATTCCCGCAGGATCAAGCACGCTTGGTCCAAGCAGCTCCATTGTTCATCAGCAGTCTGCATCAGCTGAATCTGATCATGAAGTCTCAACATCTCAACCACCTTCCACAACATCTCAACCACCTTCCACAACATCCCAACCACCTTCACCCAAAGCTCATCATACCCTCACCAATTTCAACACTTCCAATGACTGGTCACCCTTGGATGATGGTATTGAGGTTTTCCTCCCAAATGGTTCAGATAAAGCACCATCAAGGGAAGAAGTTGATGCATACATTTCCAGTAGTTTCCTGGGTCGGACTGCTAGAAGGAGGCTACCAGTATTTGCAGCACTTTGCACGGGGGATTGA 3528 0.504 METKEEEEQQREWGLYEAYNELHALAQDLHTPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYDPHCDSPLCHLVSDTDPSLSHQKSLPQIQAYIEAENARLEQDTSQFSANEIIIKVQYKYCPNLTIIDTPGLIAPAPGRKNRALQAQARAVESLVRAKMQHKEFIILCLEDCSDWSNATTRRVVMQVDPELARTVIVSTKLDTRIPQFARPSDVEVFLSPPPSTLDGCILGDSPFFTSVPSGRVGSGTGYLYASNDEFKQAVCFREIEDVASLEEKLGRALSKQERSRIGVSKLRLFLEELLQKRYINNVPLIIPLLEKEYRSVTRKLSDIDLELSTLDEAKLKEKGRAFHDMFLTKLSLLLKGTVVAPPDKFGETLQDERINGGAFVGADSVQFPHKLIPNAGMRLYGGAQYHRAMAEFRFVVGGIKCPPITREEIVNACGVEDIHDGTNYSRTACVIAVAKAHDTFEPFLHQLGSRLLYILKRLLPISVYLLQKDSEYLSGHEVFLRRVASAFNNFAESTEKSCREKCMEDLVSTTRYVSWSLHNKSRAGLRQFLDSFGGTEHSNACNNPTATALSQTSAHEKEEAKSQPDVKLSHVASGTDSSSSIQTTETKLADLLDSTLWNRRLAPSSERIVYGLVQQIFHGIREYFLVSTELKFNCFLLMPIVDKLPALLREDLESAFQDDLDNVFDMTNLQHSFGQQKRDTEIELKRIKRLKEKFRMIHEQLIVNRAISFIFFRLSVFLYAEEPTGRCNRTQSPFEQVMENAWSNGKVKVLKPRTSNENVPPLQIDTDDKRGRYLQPNTMSPRYQPYAAENIDVGSPLARYLFVGSPLSGKVAGEAFTPPTFGASKYRTAKAQQYCGSGSSSFGSRGRLSPSPLSSIENLEIASLMSPPMYRTQATGDDDVIVMDDILVRPVSGGKSGRSSSSSCRGSSSSTSSTARSVFKTEICRAWEESGNCRYNSKCQFGPLKEEFRSTKSKSAEQVVQSSVGAGSSTHGPSSHIVHQQSTAAESDHAVTTSRPPSTASESKSGEQVVESSIPAGSSTLGPSSSIVHQQSASAESDHEVSTSQPPSTTSQPPSTTSQPPSPKAHHTLTNFNTSNDWSPLDDGIEVFLPNGSDKAPSREEVDAYISSSFLGRTARRRLPVFAALCTGD 1175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01493 1175 MobiDBLite consensus disorder prediction 940 958 - -
Cca09g01493 1175 CDD DLP_1 33 329 IPR001401 GO:0003924|GO:0005525
Cca09g01493 1175 MobiDBLite consensus disorder prediction 589 626 - -
Cca09g01493 1175 MobiDBLite consensus disorder prediction 1107 1126 - -
Cca09g01493 1175 Gene3D - 957 997 - -
Cca09g01493 1175 PANTHER DYNAMIN-LIKE PROTEIN ARC5 29 746 - -
Cca09g01493 1175 MobiDBLite consensus disorder prediction 798 818 - -
Cca09g01493 1175 MobiDBLite consensus disorder prediction 1000 1098 - -
Cca09g01493 1175 PANTHER DYNAMIN 29 746 IPR022812 -
Cca09g01493 1175 PRINTS Dynamin signature 60 77 IPR022812 -
Cca09g01493 1175 PRINTS Dynamin signature 35 53 IPR022812 -
Cca09g01493 1175 PRINTS Dynamin signature 207 223 IPR022812 -
Cca09g01493 1175 PRINTS Dynamin signature 136 153 IPR022812 -
Cca09g01493 1175 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 337 IPR027417 -
Cca09g01493 1175 MobiDBLite consensus disorder prediction 996 1128 - -
Cca09g01493 1175 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 32 329 IPR030381 GO:0005525
Cca09g01493 1175 MobiDBLite consensus disorder prediction 938 958 - -
Cca09g01493 1175 ProSiteProfiles Zinc finger C3H1-type profile. 965 987 IPR000571 GO:0046872
Cca09g01493 1175 SMART dynamin_3 7 235 IPR001401 GO:0003924|GO:0005525
Cca09g01493 1175 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 965 987 IPR000571 GO:0046872
Cca09g01493 1175 Pfam Dynamin family 38 218 IPR045063 -
Cca09g01493 1175 Gene3D - 14 381 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01493 Cca-Chr9 38267805 38280614 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Cca09g01493 Dynamin_N 3.6e-30 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01493 - - gmx:100788365 1432.93