Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01489 ATGGCCAACATGGAGCGAGTGAGTTCAACTTTCATGCGTTTGTTTCTTCTTTGGACAATTTTGGTGCATGGCTTGGTGCTCAAGGTTTCTGGCAACGCAGAAGGTGATGCCCTGATGGCATTGAAGAACAATATGAATGATCCTGAAGATGTTCTTCATTCTTGGGATGCTTCCATTGTCAATCCTTGTACCTGGGTTCATGTTACTTGCAACCATGAAAATAGCGTGACCCGTGTTGATCTTGGAAATGCAAACCTTTCCGGTGAACTTGTTTCGCAACTTGGTCAACTCCCAAATTTGCAATACTTGGAACTTTATAGTAATAATATAACTGGGAAAATCCCAGATGAGCTTGGAAGTTTGGCAAACTTGGTGAGCTTGGATCTTTACGTGAACAACATTACTGGTTCCATTCCAGACAGCTTGGCCAACCTTAAAAAACTACGCTTCCTGCGTCTCAACAATAACAGTTTGTCAGGAAAAATTCCTATGCGTTTGACCACTGTTACTACACTGCAAGTGCTTGATTTATCGAACAACAACTTAACTGGAGATGTCCCAACAAATGGTTCTTTTTCATTCTTTACTCCCATTAGTTTTAAGAATAATATTTTATTGAATCAAACTGCTCCAACTCCATCAGCTCCTACACCACCACAAAATCATTCAGGTAATGGTAATAGAGCTATTGGAGCCATTGCTGGAGGAGTTGCTGTGGGTGCTGCACTATTATTTGCAGCCCCTTTAATTGCACTTGTTTATTGGAAAAGAAGGAAGCCACAAAATTATTTCTTTGATGTTGCAGCTGAGGAGGATCCTGAAGTTCACCTTGGTCAGCTTAAAAAGTTTTCACTGCGTGAACTGCAAGTTGCAACAGATAGCTTTAATAACAAAAACATTCTTGGTAGAGGAGGATTTGGCAAGGTTTATAAGGGACGCTTAACAAATGGTGAGCTTGTAGCTGTAAAAAGGCTTAAAGAAGAACGCACCCAGGGTGGGGAGATGCAATTTCAAACTGAGGTGGAAATGATCAGTATGGCTGTGCATCGAAATTTGCTTCGCCTGCATGGTTTTTGTATGACACCTACTGAACGCTTGCTTGTGTATCCTTTCATGGTTAATGGAAGTGTGGCTTCATGCTTACGAGACCGTCCGGAATCAAAAGCACCACTTGAATGGCCAACACGAAAGCGTATTGCCCTGGGAGCTGCTAGGGGGCTTTCTTATTTGCATGATCATTGTGACCCAAAGATCATTCATCGTGATGTCAAAGCTGCAAATATATTGTTGGATGAGGACTTTGAAGCAATAGTTGGAGATTTTGGTTTAGCAAAGCTCATGAATTACAAAGATACTCATGTTACTACTGCTGTACGTGGTACTATTGGCCATATAGCCCCAGAGTACCTCTCAACTGGAAAGTCCTCAGAGAAGACGGATGTTTTTGGATATGGTGTGATGCTTCTTGAACTAATAACCGGACAAAGGGCTTTTGATTTAGCACGACTTGCCAATGATGATGATGTTATGTTGCTTGATTGGGTGAAAGTACTTCTTAAAGAGAAGAGGTTGGAAACACTGGTGGATGCAGATTTAGAGGGGAATTTTGAGGAGGGGGAAGTAGAAGAGGTAATCCAGGTGGCTTTGCTCTGCACACAAAGCTCCCCTTCGGAAAGACCCAAGATGTCTGAGGTGGTGAGAATGCTAGAAGGTGAAGGTTTGGCAGAAAAGTGGAATAAATGGTGGCAGAAAGAGGATATGATCAAGCAAAATTTCGATCCCAACAATTTCCACACCACTTATTGGCCACTATTAGACTCAACTTCAAATGTTCCACCAGATGAACTATCAGGTCCTAGATGA 1863 0.4203 MANMERVSSTFMRLFLLWTILVHGLVLKVSGNAEGDALMALKNNMNDPEDVLHSWDASIVNPCTWVHVTCNHENSVTRVDLGNANLSGELVSQLGQLPNLQYLELYSNNITGKIPDELGSLANLVSLDLYVNNITGSIPDSLANLKKLRFLRLNNNSLSGKIPMRLTTVTTLQVLDLSNNNLTGDVPTNGSFSFFTPISFKNNILLNQTAPTPSAPTPPQNHSGNGNRAIGAIAGGVAVGAALLFAAPLIALVYWKRRKPQNYFFDVAAEEDPEVHLGQLKKFSLRELQVATDSFNNKNILGRGGFGKVYKGRLTNGELVAVKRLKEERTQGGEMQFQTEVEMISMAVHRNLLRLHGFCMTPTERLLVYPFMVNGSVASCLRDRPESKAPLEWPTRKRIALGAARGLSYLHDHCDPKIIHRDVKAANILLDEDFEAIVGDFGLAKLMNYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKVLLKEKRLETLVDADLEGNFEEGEVEEVIQVALLCTQSSPSERPKMSEVVRMLEGEGLAEKWNKWWQKEDMIKQNFDPNNFHTTYWPLLDSTSNVPPDELSGPR 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01489 620 PANTHER BNAA08G11770D PROTEIN 13 620 IPR031048 GO:0004675|GO:0005102|GO:0006468
Cca09g01489 620 Pfam Leucine Rich Repeat 172 186 IPR001611 GO:0005515
Cca09g01489 620 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 620 - -
Cca09g01489 620 ProSiteProfiles Protein kinase domain profile. 295 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01489 620 SMART serkin_6 295 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01489 620 SUPERFAMILY Protein kinase-like (PK-like) 275 570 IPR011009 -
Cca09g01489 620 ProSitePatterns Protein kinases ATP-binding region signature. 301 323 IPR017441 GO:0005524
Cca09g01489 620 Gene3D Phosphorylase Kinase; domain 1 264 371 - -
Cca09g01489 620 Gene3D Ribonuclease Inhibitor 31 213 IPR032675 -
Cca09g01489 620 SUPERFAMILY L domain-like 34 197 - -
Cca09g01489 620 ProSitePatterns Serine/Threonine protein kinases active-site signature. 418 430 IPR008271 GO:0004672|GO:0006468
Cca09g01489 620 Pfam Protein kinase domain 296 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01489 620 Pfam Leucine rich repeat 98 158 IPR001611 GO:0005515
Cca09g01489 620 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Cca09g01489 620 Gene3D Transferase(Phosphotransferase) domain 1 372 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01489 Cca-Chr9 38209925 38228987 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01489 16 620 Receptor kinase-like Gene Family AT4G33430 71.407 0.0 903
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Cca09g01489 Pkinase 3.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01489 K13416 - gmx:100804180 1015.37